miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 5' -66.1 NC_001798.1 + 160 0.69 0.283262
Target:  5'- cGCCCCucccCCCGCGCGCCgcggGgCUGCCu- -3'
miRNA:   3'- -UGGGGc---GGGCGUGUGGa---CgGGCGGug -5'
5326 5' -66.1 NC_001798.1 + 203 0.67 0.381664
Target:  5'- cCCCCGCgCGgcuuuuuuccCGCGCCcGCCC-CCGCg -3'
miRNA:   3'- uGGGGCGgGC----------GUGUGGaCGGGcGGUG- -5'
5326 5' -66.1 NC_001798.1 + 292 0.65 0.470795
Target:  5'- uCCCCGCCCccccgaagacgccaGuCGCACCaccGCUCGCCcucGCa -3'
miRNA:   3'- uGGGGCGGG--------------C-GUGUGGa--CGGGCGG---UG- -5'
5326 5' -66.1 NC_001798.1 + 364 0.79 0.055882
Target:  5'- -gCCCGCCCGCACACgguucCCCGCCACc -3'
miRNA:   3'- ugGGGCGGGCGUGUGgac--GGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 432 0.68 0.336852
Target:  5'- uCCCC-CCCGCGCGCCacggggcugcgGuCCCGCgGCc -3'
miRNA:   3'- uGGGGcGGGCGUGUGGa----------C-GGGCGgUG- -5'
5326 5' -66.1 NC_001798.1 + 517 0.67 0.413669
Target:  5'- cGCCCCucccCCCGCGC-CCgcgGCCCcgaGCuCGCa -3'
miRNA:   3'- -UGGGGc---GGGCGUGuGGa--CGGG---CG-GUG- -5'
5326 5' -66.1 NC_001798.1 + 689 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 719 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 749 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 779 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 809 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 839 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 869 0.77 0.090288
Target:  5'- cCCCCGCCCGCccgACcCCcGCCCGCC-Cg -3'
miRNA:   3'- uGGGGCGGGCG---UGuGGaCGGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 1159 0.74 0.133083
Target:  5'- aGCCCCGCggcgguccccaccaCCucCACGCCgccGCCCGCCGCg -3'
miRNA:   3'- -UGGGGCG--------------GGc-GUGUGGa--CGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 1339 0.73 0.1666
Target:  5'- cGCCgCgGCCCGCGCAgcuCCgccgGgCCGCCGCg -3'
miRNA:   3'- -UGG-GgCGGGCGUGU---GGa---CgGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 1494 0.68 0.351354
Target:  5'- gGCgUCGCCCGCGC-CCgaggcggcgGCCCgGCCGu -3'
miRNA:   3'- -UGgGGCGGGCGUGuGGa--------CGGG-CGGUg -5'
5326 5' -66.1 NC_001798.1 + 1829 0.68 0.351354
Target:  5'- -gCCCGUCgGCGgGCCaGUCCGCgGCg -3'
miRNA:   3'- ugGGGCGGgCGUgUGGaCGGGCGgUG- -5'
5326 5' -66.1 NC_001798.1 + 2044 0.67 0.381664
Target:  5'- uGCCcagggCCGCCaGCAgGCaggacaGCCCGCCGCg -3'
miRNA:   3'- -UGG-----GGCGGgCGUgUGga----CGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 2650 0.69 0.289575
Target:  5'- gGCUCuugCGCuuGCGCGCCU-CCCGCgGCg -3'
miRNA:   3'- -UGGG---GCGggCGUGUGGAcGGGCGgUG- -5'
5326 5' -66.1 NC_001798.1 + 3133 0.74 0.12767
Target:  5'- -gCCCGCcuCCGCGCGCCgGCcgCCGCCACc -3'
miRNA:   3'- ugGGGCG--GGCGUGUGGaCG--GGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.