miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 5' -66.1 NC_001798.1 + 154541 0.67 0.381664
Target:  5'- cCCCCGCgCGgcuuuuuuccCGCGCCcGCCC-CCGCg -3'
miRNA:   3'- uGGGGCGgGC----------GUGUGGaCGGGcGGUG- -5'
5326 5' -66.1 NC_001798.1 + 154498 0.69 0.283262
Target:  5'- cGCCCCucccCCCGCGCGCCgcggGgCUGCCu- -3'
miRNA:   3'- -UGGGGc---GGGCGUGUGGa---CgGGCGGug -5'
5326 5' -66.1 NC_001798.1 + 153696 0.66 0.438729
Target:  5'- gGCCgCCGCCgGCGCagGCUcagGCgCGCCAg -3'
miRNA:   3'- -UGG-GGCGGgCGUG--UGGa--CGgGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 153411 0.69 0.295997
Target:  5'- -gCCCGCUCGCGCGCCcaggaccCCCGUCGg -3'
miRNA:   3'- ugGGGCGGGCGUGUGGac-----GGGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 153374 0.66 0.45591
Target:  5'- gGCCgCCGCCaCGCgGCGCCggaaCCgGUCGCg -3'
miRNA:   3'- -UGG-GGCGG-GCG-UGUGGac--GGgCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 153235 0.69 0.277059
Target:  5'- gGCCCgCGgcggcggaggaCCCGCGCGCC-GCCgcCGCCGCc -3'
miRNA:   3'- -UGGG-GC-----------GGGCGUGUGGaCGG--GCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 152646 0.77 0.077673
Target:  5'- cGCCCCGCCgGCGCgGCCcugaguggUGCCCGCCc- -3'
miRNA:   3'- -UGGGGCGGgCGUG-UGG--------ACGGGCGGug -5'
5326 5' -66.1 NC_001798.1 + 152120 0.73 0.1666
Target:  5'- uCCCCGCCCccgaGCcCACC-GCCCGCgACc -3'
miRNA:   3'- uGGGGCGGG----CGuGUGGaCGGGCGgUG- -5'
5326 5' -66.1 NC_001798.1 + 151272 0.67 0.413669
Target:  5'- -gCCgGCCCGCACgGCCgccucgGCCU-CCACg -3'
miRNA:   3'- ugGGgCGGGCGUG-UGGa-----CGGGcGGUG- -5'
5326 5' -66.1 NC_001798.1 + 151116 0.74 0.140743
Target:  5'- cCCCCGCCCGCccuCACC-GUCgGCCAg -3'
miRNA:   3'- uGGGGCGGGCGu--GUGGaCGGgCGGUg -5'
5326 5' -66.1 NC_001798.1 + 151083 0.73 0.147731
Target:  5'- cCCCCGCCCG-ACcCCcGCCCGCCc- -3'
miRNA:   3'- uGGGGCGGGCgUGuGGaCGGGCGGug -5'
5326 5' -66.1 NC_001798.1 + 151028 0.69 0.30253
Target:  5'- cCCCCGCCCG-ACcCCcGCCCGacccCCGCc -3'
miRNA:   3'- uGGGGCGGGCgUGuGGaCGGGC----GGUG- -5'
5326 5' -66.1 NC_001798.1 + 150995 0.69 0.30253
Target:  5'- cCCCCGCCCG-ACcCCcGCCCGacccCCGCc -3'
miRNA:   3'- uGGGGCGGGCgUGuGGaCGGGC----GGUG- -5'
5326 5' -66.1 NC_001798.1 + 150892 0.66 0.438729
Target:  5'- cCCCCGCaCCGC-CGCCc-CCgCGCCGg -3'
miRNA:   3'- uGGGGCG-GGCGuGUGGacGG-GCGGUg -5'
5326 5' -66.1 NC_001798.1 + 150796 0.76 0.097305
Target:  5'- cCCCCGCCCGCAa--CgggGCgCCGCCGCu -3'
miRNA:   3'- uGGGGCGGGCGUgugGa--CG-GGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 150689 0.75 0.115443
Target:  5'- cGCCCa-CCCGCGCGCCUgcgcgcgccccccGCCgGCCGCa -3'
miRNA:   3'- -UGGGgcGGGCGUGUGGA-------------CGGgCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 150263 0.73 0.158805
Target:  5'- cUCCCGaCCCGCgcgcgucggucGCGCCUGCCCgGCC-Ca -3'
miRNA:   3'- uGGGGC-GGGCG-----------UGUGGACGGG-CGGuG- -5'
5326 5' -66.1 NC_001798.1 + 149479 0.7 0.270965
Target:  5'- gGCCgCgGCCCGCAgCAg--GUCCGCCACg -3'
miRNA:   3'- -UGG-GgCGGGCGU-GUggaCGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 148645 0.67 0.405513
Target:  5'- aGCCaggCGCCCuccCACuCCUGCCCaCCACc -3'
miRNA:   3'- -UGGg--GCGGGc--GUGuGGACGGGcGGUG- -5'
5326 5' -66.1 NC_001798.1 + 147963 0.66 0.463759
Target:  5'- cACCCCcCCC-CaacaaccccaaagGCGCgUGCCCGgCCACa -3'
miRNA:   3'- -UGGGGcGGGcG-------------UGUGgACGGGC-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.