miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 68636 0.66 0.71853
Target:  5'- cGCGgacGCCCGCCGCGcCGCGGUCaGCgAg -3'
miRNA:   3'- -UGC---CGGGUGGUGUuGUGCCGGgUGgU- -5'
5327 3' -60.9 NC_001798.1 + 136349 0.66 0.71853
Target:  5'- -aGGCCauuuGCCGCGucGCGCGuGCCaACCAa -3'
miRNA:   3'- ugCCGGg---UGGUGU--UGUGC-CGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 26269 0.66 0.71853
Target:  5'- gUGGCUCAcCCACAACGCcaGCCUGCg- -3'
miRNA:   3'- uGCCGGGU-GGUGUUGUGc-CGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 153346 0.66 0.71853
Target:  5'- gACGGgCCGCaGCGGCGCG-CCCAggccCCAg -3'
miRNA:   3'- -UGCCgGGUGgUGUUGUGCcGGGU----GGU- -5'
5327 3' -60.9 NC_001798.1 + 131545 0.66 0.71853
Target:  5'- gACGa-CgACCGCGACGCGGgCCGCUg -3'
miRNA:   3'- -UGCcgGgUGGUGUUGUGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 82122 0.66 0.71853
Target:  5'- gACGGCgCACCucgggguauGCGACgagcugGCGGCCCAg-- -3'
miRNA:   3'- -UGCCGgGUGG---------UGUUG------UGCCGGGUggu -5'
5327 3' -60.9 NC_001798.1 + 58597 0.66 0.71853
Target:  5'- cACGGCCgggugacuCGCCAUG--GCGGCCgCGCCc -3'
miRNA:   3'- -UGCCGG--------GUGGUGUugUGCCGG-GUGGu -5'
5327 3' -60.9 NC_001798.1 + 37378 0.66 0.71853
Target:  5'- -gGGCUaCACCGCcguCGCGGCCacgggCACCGu -3'
miRNA:   3'- ugCCGG-GUGGUGuu-GUGCCGG-----GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 14585 0.66 0.71853
Target:  5'- aAC-GCCCuguACCACAccccccaguACGCGGgCCGCCu -3'
miRNA:   3'- -UGcCGGG---UGGUGU---------UGUGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 132227 0.66 0.71853
Target:  5'- cGCGGCUa--C-CGACGCGGCC-GCCAg -3'
miRNA:   3'- -UGCCGGgugGuGUUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 25402 0.66 0.71853
Target:  5'- cGCGgagcGCCCGCCGgGccugGCGgGGCCC-CCGg -3'
miRNA:   3'- -UGC----CGGGUGGUgU----UGUgCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 35773 0.66 0.708859
Target:  5'- cCGGuCCCGCuCcCAACGCcccuGGCCCGCgAg -3'
miRNA:   3'- uGCC-GGGUG-GuGUUGUG----CCGGGUGgU- -5'
5327 3' -60.9 NC_001798.1 + 98791 0.66 0.708859
Target:  5'- cCGGCCaCGCCAgCuGCGCGcGCaCCugCGg -3'
miRNA:   3'- uGCCGG-GUGGU-GuUGUGC-CG-GGugGU- -5'
5327 3' -60.9 NC_001798.1 + 114353 0.66 0.708859
Target:  5'- -aGGUCCACCAgccccucaucgcCcGCgACGGCCCGCa- -3'
miRNA:   3'- ugCCGGGUGGU------------GuUG-UGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 102078 0.66 0.708859
Target:  5'- -gGGcCCCACCGgcgGAUACGGCCCGu-- -3'
miRNA:   3'- ugCC-GGGUGGUg--UUGUGCCGGGUggu -5'
5327 3' -60.9 NC_001798.1 + 72231 0.66 0.708859
Target:  5'- -gGGCCguCgaGCAGCuGCGGCCCGCg- -3'
miRNA:   3'- ugCCGGguGg-UGUUG-UGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 24478 0.66 0.708859
Target:  5'- cGCcGCCCuggggcGCCugAGCGcCGcGCCCGCCu -3'
miRNA:   3'- -UGcCGGG------UGGugUUGU-GC-CGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 4111 0.66 0.708859
Target:  5'- uCGGCCCugggcgggcucgGCCGgGGCGCcGCCC-CCGg -3'
miRNA:   3'- uGCCGGG------------UGGUgUUGUGcCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 1515 0.66 0.708859
Target:  5'- gGCGGCCCggccguccagcGCCGgGAgCACGGCgCGgCGg -3'
miRNA:   3'- -UGCCGGG-----------UGGUgUU-GUGCCGgGUgGU- -5'
5327 3' -60.9 NC_001798.1 + 104417 0.66 0.708859
Target:  5'- -aGGagCCGCCGaAGCACGGCCaggGCCGu -3'
miRNA:   3'- ugCCg-GGUGGUgUUGUGCCGGg--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.