Results 1 - 20 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5327 | 3' | -60.9 | NC_001798.1 | + | 363 | 0.69 | 0.53179 |
Target: 5'- --cGCCCGcCCGC-ACACGGuucCCCGCCAc -3' miRNA: 3'- ugcCGGGU-GGUGuUGUGCC---GGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 1190 | 0.77 | 0.175898 |
Target: 5'- cGCcGCCCGCCGCGgccagcaccguccccGCGCGGCCCGCg- -3' miRNA: 3'- -UGcCGGGUGGUGU---------------UGUGCCGGGUGgu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 1342 | 0.73 | 0.292991 |
Target: 5'- cGCGGCCCG-CGCAGCuccgcCGGgCCGCCGc -3' miRNA: 3'- -UGCCGGGUgGUGUUGu----GCCgGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 1515 | 0.66 | 0.708859 |
Target: 5'- gGCGGCCCggccguccagcGCCGgGAgCACGGCgCGgCGg -3' miRNA: 3'- -UGCCGGG-----------UGGUgUU-GUGCCGgGUgGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 1700 | 0.66 | 0.699126 |
Target: 5'- cCGGCCCGa-AC-ACGCGGCCggagGCCAg -3' miRNA: 3'- uGCCGGGUggUGuUGUGCCGGg---UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 1747 | 0.66 | 0.67951 |
Target: 5'- cGCGccGCCgGCCAgcGCACGGCgCACUg -3' miRNA: 3'- -UGC--CGGgUGGUguUGUGCCGgGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 2049 | 0.66 | 0.669643 |
Target: 5'- -aGGgCCGCCagcagGCAGgACaGCCCGCCGc -3' miRNA: 3'- ugCCgGGUGG-----UGUUgUGcCGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 2102 | 0.81 | 0.09524 |
Target: 5'- -gGGCCCGCCccCGGCGCGGCCCGCg- -3' miRNA: 3'- ugCCGGGUGGu-GUUGUGCCGGGUGgu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 2549 | 0.69 | 0.522226 |
Target: 5'- cGCGGCCC-CCGCGGgAgGGgCgGCCGc -3' miRNA: 3'- -UGCCGGGuGGUGUUgUgCCgGgUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 2799 | 0.68 | 0.560839 |
Target: 5'- -gGGCuCCGCgGCAGCGCcgGGCCCAgggccCCGg -3' miRNA: 3'- ugCCG-GGUGgUGUUGUG--CCGGGU-----GGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 2864 | 0.69 | 0.53179 |
Target: 5'- gGCGGCCuCGCUGCcGC-CGGCCaCGCgCAg -3' miRNA: 3'- -UGCCGG-GUGGUGuUGuGCCGG-GUG-GU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 2973 | 0.67 | 0.610104 |
Target: 5'- uCGGCgUGCgGCGGgGCGGCCgGCCc -3' miRNA: 3'- uGCCGgGUGgUGUUgUGCCGGgUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 3035 | 0.73 | 0.292991 |
Target: 5'- cCGGCCaGCCcCGGCACGGCC-GCCAg -3' miRNA: 3'- uGCCGGgUGGuGUUGUGCCGGgUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 3106 | 0.8 | 0.105513 |
Target: 5'- gGCGGCCaggcacuCCACGgccACGCGGCCCGCCu -3' miRNA: 3'- -UGCCGGgu-----GGUGU---UGUGCCGGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 3508 | 0.71 | 0.38087 |
Target: 5'- cACGGCggCCGCCACGuGCGCcaGGCCCcaGCCGa -3' miRNA: 3'- -UGCCG--GGUGGUGU-UGUG--CCGGG--UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 3543 | 0.8 | 0.118011 |
Target: 5'- aGCGGCCCGCCGCcaugGcguaccccaggugggGCACGGCCCgcGCCAc -3' miRNA: 3'- -UGCCGGGUGGUG----U---------------UGUGCCGGG--UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 3867 | 0.69 | 0.522226 |
Target: 5'- cCaGCCCGCCguACAGCACGcGCCCcgggggcgggggGCCGg -3' miRNA: 3'- uGcCGGGUGG--UGUUGUGC-CGGG------------UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 4016 | 0.78 | 0.153974 |
Target: 5'- aGCGGCCCGugGCGuCGCGGCCgGCCAc -3' miRNA: 3'- -UGCCGGGUggUGUuGUGCCGGgUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 4052 | 0.66 | 0.67951 |
Target: 5'- -gGGCCCgGCgGCGcuccAgGCGGCCCGCg- -3' miRNA: 3'- ugCCGGG-UGgUGU----UgUGCCGGGUGgu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 4111 | 0.66 | 0.708859 |
Target: 5'- uCGGCCCugggcgggcucgGCCGgGGCGCcGCCC-CCGg -3' miRNA: 3'- uGCCGGG------------UGGUgUUGUGcCGGGuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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