miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 143812 0.68 0.590306
Target:  5'- -aGGCCCggGCgGC-GCGCGGCCaGCCGu -3'
miRNA:   3'- ugCCGGG--UGgUGuUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 141479 0.7 0.479163
Target:  5'- cCGGCUCGCCGC-GCGgggggcugauguccgUGGCCCugCAg -3'
miRNA:   3'- uGCCGGGUGGUGuUGU---------------GCCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 139577 0.7 0.439667
Target:  5'- gGCGGCCUuggagguCC-CGAC-CGGCCUGCCGc -3'
miRNA:   3'- -UGCCGGGu------GGuGUUGuGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 139069 0.77 0.178499
Target:  5'- cGCGGgCCACCACGugGCGGCgCCAguCCu -3'
miRNA:   3'- -UGCCgGGUGGUGUugUGCCG-GGU--GGu -5'
5327 3' -60.9 NC_001798.1 + 138732 0.67 0.600194
Target:  5'- -gGGCCgGCgCGCucCGCGGCCCcggcgaccgugGCCAg -3'
miRNA:   3'- ugCCGGgUG-GUGuuGUGCCGGG-----------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 137990 0.66 0.669643
Target:  5'- -gGGCgCGCCGCAGCucGCGGUCgcgCGCCu -3'
miRNA:   3'- ugCCGgGUGGUGUUG--UGCCGG---GUGGu -5'
5327 3' -60.9 NC_001798.1 + 137924 0.7 0.457395
Target:  5'- gGCGGCCCgcGCCuccccCGGCcgccCGGUCCGCCGc -3'
miRNA:   3'- -UGCCGGG--UGGu----GUUGu---GCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 136364 0.7 0.4755
Target:  5'- uCGGUgCACaagaCACAcACACaGGCCCACCAc -3'
miRNA:   3'- uGCCGgGUG----GUGU-UGUG-CCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 136349 0.66 0.71853
Target:  5'- -aGGCCauuuGCCGCGucGCGCGuGCCaACCAa -3'
miRNA:   3'- ugCCGGg---UGGUGU--UGUGC-CGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 135771 0.77 0.161789
Target:  5'- gGCGGCCgGCCGC----CGGCCCGCCGg -3'
miRNA:   3'- -UGCCGGgUGGUGuuguGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 135500 0.72 0.372909
Target:  5'- cGCGGaCgCCGCgCACGGCGCGauccaggacGCCCGCCGg -3'
miRNA:   3'- -UGCC-G-GGUG-GUGUUGUGC---------CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 135056 0.71 0.413827
Target:  5'- gGCGGCCgGCCGCcuC-CuGCCCGCCu -3'
miRNA:   3'- -UGCCGGgUGGUGuuGuGcCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 135020 0.68 0.551102
Target:  5'- cCuGCCC-CCGCgGGCAUGGCCgGCCGu -3'
miRNA:   3'- uGcCGGGuGGUG-UUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 134294 0.67 0.633938
Target:  5'- -gGGCCCucuucgucccgcugcGCCugGGCugGGaCCCGCa- -3'
miRNA:   3'- ugCCGGG---------------UGGugUUGugCC-GGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 134172 0.71 0.388943
Target:  5'- cGCGGCCgcccgCGCCGCG--ACGGCCCcgGCCGc -3'
miRNA:   3'- -UGCCGG-----GUGGUGUugUGCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 134137 0.67 0.610104
Target:  5'- uACGGCUCcCC-CGACGucuCGGCCC-CCGg -3'
miRNA:   3'- -UGCCGGGuGGuGUUGU---GCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 133651 0.66 0.68934
Target:  5'- gAC-GCCCACCGCAucgacCACaGcGCCUGCCGg -3'
miRNA:   3'- -UGcCGGGUGGUGUu----GUG-C-CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 133057 0.69 0.491165
Target:  5'- cGCGGCCUcaacagccuggucgGCCGC-ACGCGGUUCAUCu -3'
miRNA:   3'- -UGCCGGG--------------UGGUGuUGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 132227 0.66 0.71853
Target:  5'- cGCGGCUa--C-CGACGCGGCC-GCCAg -3'
miRNA:   3'- -UGCCGGgugGuGUUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 132133 0.68 0.580447
Target:  5'- gGCGGCCCugCGCcGCcgGgGGCCgGCgGg -3'
miRNA:   3'- -UGCCGGGugGUGuUG--UgCCGGgUGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.