Results 61 - 80 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5327 | 5' | -55.1 | NC_001798.1 | + | 48349 | 0.68 | 0.869314 |
Target: 5'- -uCGACGCGAcCGCGgccgccCGGGGCc -3' miRNA: 3'- guGCUGUGCU-GCGCaaaac-GCCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 7991 | 0.68 | 0.869314 |
Target: 5'- gCACG-CGuCGACGUGUUccuacGCGGGGUu -3' miRNA: 3'- -GUGCuGU-GCUGCGCAAaa---CGCCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 4212 | 0.68 | 0.8618 |
Target: 5'- uGCGGCGCuGGCGgGg---GCGcGGGCGg -3' miRNA: 3'- gUGCUGUG-CUGCgCaaaaCGC-CCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 26335 | 0.68 | 0.8618 |
Target: 5'- uGgGGCGCGACGcCGUgc-GCGGcGGCc -3' miRNA: 3'- gUgCUGUGCUGC-GCAaaaCGCC-CCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 97467 | 0.68 | 0.8618 |
Target: 5'- gCGCGGCugggggccgGCGGCGCGaccgGgGGGGCc -3' miRNA: 3'- -GUGCUG---------UGCUGCGCaaaaCgCCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 154055 | 0.68 | 0.8618 |
Target: 5'- gCGCGGCACGGCuggaGCGc----CGGGGCGc -3' miRNA: 3'- -GUGCUGUGCUG----CGCaaaacGCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 148438 | 0.68 | 0.854079 |
Target: 5'- --gGGCACGG-GCGUaagUGCGGGuGCAu -3' miRNA: 3'- gugCUGUGCUgCGCAaa-ACGCCC-CGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 40201 | 0.68 | 0.846156 |
Target: 5'- aGCGGCAcCGACGCGcaac-CGGGGUc -3' miRNA: 3'- gUGCUGU-GCUGCGCaaaacGCCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 21963 | 0.68 | 0.846156 |
Target: 5'- gCGCGGgAUGACGCGggccccggGCaGGGCGc -3' miRNA: 3'- -GUGCUgUGCUGCGCaaaa----CGcCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 21826 | 0.69 | 0.838038 |
Target: 5'- cCGCGGgAUGACGCGggccccggGCaGGGCGc -3' miRNA: 3'- -GUGCUgUGCUGCGCaaaa----CGcCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 138755 | 0.69 | 0.838038 |
Target: 5'- gGCGAC-CGugGCcagcUGcCGGGGCAg -3' miRNA: 3'- gUGCUGuGCugCGcaaaAC-GCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 3311 | 0.69 | 0.838038 |
Target: 5'- gACGGCAaCGGgGCGgcg-GCGGcGGCGg -3' miRNA: 3'- gUGCUGU-GCUgCGCaaaaCGCC-CCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 102206 | 0.69 | 0.824663 |
Target: 5'- gCGCGGCGCGccgggagucgaccggGCGCGgcu--CGGGGCGg -3' miRNA: 3'- -GUGCUGUGC---------------UGCGCaaaacGCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 153001 | 0.69 | 0.81259 |
Target: 5'- -cCGGCGCGGgGCGgucgcCGGGGCGg -3' miRNA: 3'- guGCUGUGCUgCGCaaaacGCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 34587 | 0.69 | 0.81259 |
Target: 5'- aCGCGGCGCGGCGUcucgGUgg-GaCGcGGGCAa -3' miRNA: 3'- -GUGCUGUGCUGCG----CAaaaC-GC-CCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 91804 | 0.69 | 0.803768 |
Target: 5'- gCGCGGgGCGugGggacCGUgg-GCGGGGCc -3' miRNA: 3'- -GUGCUgUGCugC----GCAaaaCGCCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 72574 | 0.69 | 0.803768 |
Target: 5'- gCGCGcGCugGuCGCGUcccucGCGGGGCu -3' miRNA: 3'- -GUGC-UGugCuGCGCAaaa--CGCCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 96969 | 0.69 | 0.803768 |
Target: 5'- gCGCuGGCGCGGacCGCGgcgggcgGCGGGGCc -3' miRNA: 3'- -GUG-CUGUGCU--GCGCaaaa---CGCCCCGu -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 84720 | 0.69 | 0.803768 |
Target: 5'- gCACGcACGCGGuguccUGCGUa-UGUGGGGCGg -3' miRNA: 3'- -GUGC-UGUGCU-----GCGCAaaACGCCCCGU- -5' |
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5327 | 5' | -55.1 | NC_001798.1 | + | 12023 | 0.69 | 0.803768 |
Target: 5'- aACGcCACGGCGgGgcg-GCGgGGGCAu -3' miRNA: 3'- gUGCuGUGCUGCgCaaaaCGC-CCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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