miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 54386 0.67 0.903582
Target:  5'- gGgGGcCGCGGCGCGgucgGCGGGaGCu -3'
miRNA:   3'- gUgCU-GUGCUGCGCaaaaCGCCC-CGu -5'
5327 5' -55.1 NC_001798.1 + 16050 0.67 0.903582
Target:  5'- aGCGACGCGugGUagGUcgcUG-GGGGCGg -3'
miRNA:   3'- gUGCUGUGCugCG--CAaa-ACgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 23205 0.67 0.903582
Target:  5'- gACGAcCGCGACGCGggccGCuGGGUc -3'
miRNA:   3'- gUGCU-GUGCUGCGCaaaaCGcCCCGu -5'
5327 5' -55.1 NC_001798.1 + 27044 0.67 0.903582
Target:  5'- gGCGGCACGucuccCGCGccc-GCGGGGgGu -3'
miRNA:   3'- gUGCUGUGCu----GCGCaaaaCGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 31774 0.67 0.903582
Target:  5'- gCGCGAC-CGACGCGc---GCGGGuCGg -3'
miRNA:   3'- -GUGCUGuGCUGCGCaaaaCGCCCcGU- -5'
5327 5' -55.1 NC_001798.1 + 1226 0.67 0.903582
Target:  5'- cCGCGGC-CGACgcccaGCGUaucUGCGgGGGCGg -3'
miRNA:   3'- -GUGCUGuGCUG-----CGCAaa-ACGC-CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 11337 0.67 0.903582
Target:  5'- gACGACgaACGGCGuCGgggUUUGgGGGGgGu -3'
miRNA:   3'- gUGCUG--UGCUGC-GCa--AAACgCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 52062 0.67 0.89977
Target:  5'- gCGCGACugucGCGugGCcgcccgcuacGCGGGGCGc -3'
miRNA:   3'- -GUGCUG----UGCugCGcaaaa-----CGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 9142 0.67 0.899127
Target:  5'- uGCGGCACGcggGCGCGgcgccgcccgcgccGgGGGGCAg -3'
miRNA:   3'- gUGCUGUGC---UGCGCaaaa----------CgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 83351 0.67 0.897183
Target:  5'- cCGCGGCGuCGccCGCGaacauaggcUGCGGGGCGa -3'
miRNA:   3'- -GUGCUGU-GCu-GCGCaaa------ACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 39420 0.67 0.897183
Target:  5'- cCGgGGCGCGGC-CGUccgcgUGCGGGGgGg -3'
miRNA:   3'- -GUgCUGUGCUGcGCAaa---ACGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 19842 0.67 0.890553
Target:  5'- gCGCGACACG-CGCc-----CGGGGCGg -3'
miRNA:   3'- -GUGCUGUGCuGCGcaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 11589 0.67 0.890553
Target:  5'- uCGCuGGC-CGAuCGCGUggaauuggGCGGGGCu -3'
miRNA:   3'- -GUG-CUGuGCU-GCGCAaaa-----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 135958 0.67 0.888519
Target:  5'- gCugGACGCggagcaauacuggaGACGCGUcgUGCgcguaugucccgGGGGCGg -3'
miRNA:   3'- -GugCUGUG--------------CUGCGCAaaACG------------CCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 1627 0.68 0.883695
Target:  5'- cCGCGGCagaggcgcagcgGCGGCGCGU----CGGGGUAc -3'
miRNA:   3'- -GUGCUG------------UGCUGCGCAaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 58984 0.68 0.883695
Target:  5'- gGCGGCcggGCGaACGCGg---GgGGGGCGc -3'
miRNA:   3'- gUGCUG---UGC-UGCGCaaaaCgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 24569 0.68 0.883695
Target:  5'- gGCGGC-CGGCGCGcggagGCGGGccGCGu -3'
miRNA:   3'- gUGCUGuGCUGCGCaaaa-CGCCC--CGU- -5'
5327 5' -55.1 NC_001798.1 + 16622 0.68 0.883695
Target:  5'- gACGG-ACGACGCGc----CGGGGCAg -3'
miRNA:   3'- gUGCUgUGCUGCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 97815 0.68 0.876614
Target:  5'- uCGCGGCGCGcGCGCGcUUcUGCGcccugacggcGGGCGc -3'
miRNA:   3'- -GUGCUGUGC-UGCGC-AAaACGC----------CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 54715 0.68 0.876614
Target:  5'- cUACGACGCGGUGCGgaccUG-GGGGCc -3'
miRNA:   3'- -GUGCUGUGCUGCGCaaa-ACgCCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.