miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 139352 0.66 0.921363
Target:  5'- uGCGGCcAUGGCgGCGUccgGCGGGGa- -3'
miRNA:   3'- gUGCUG-UGCUG-CGCAaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 149984 0.66 0.921363
Target:  5'- gCGCGGCGCc-CGCGgacgcCGGGGCGa -3'
miRNA:   3'- -GUGCUGUGcuGCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 154080 0.66 0.921363
Target:  5'- nGCGGCACGGCuggaGCGc----CGGGGCGc -3'
miRNA:   3'- gUGCUGUGCUG----CGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 95662 0.66 0.921363
Target:  5'- aCGCGGCGucguuCGGCG-GUUUgGCGGcGGCGg -3'
miRNA:   3'- -GUGCUGU-----GCUGCgCAAAaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 47047 0.66 0.920805
Target:  5'- aCGCGGCguuaucgGgGACGCGcaaUGcCGGGGCGa -3'
miRNA:   3'- -GUGCUG-------UgCUGCGCaaaAC-GCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 2544 0.66 0.920805
Target:  5'- gGgGGCGCGGCccccgcgggagggGCGgcc-GCGGGGCGg -3'
miRNA:   3'- gUgCUGUGCUG-------------CGCaaaaCGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 15885 0.67 0.915674
Target:  5'- gCAgGGCGCGucgaaacCGCGg---GCGGGGUg -3'
miRNA:   3'- -GUgCUGUGCu------GCGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 135450 0.67 0.915674
Target:  5'- gGCGGCACcggGGCuGCGUUcUG-GGGGCu -3'
miRNA:   3'- gUGCUGUG---CUG-CGCAAaACgCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 23243 0.67 0.915674
Target:  5'- gACGACGuc-CGCGguccGCGGGGCGu -3'
miRNA:   3'- gUGCUGUgcuGCGCaaaaCGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 56521 0.67 0.915674
Target:  5'- aGCGGauCGugGCGg--UGcCGGGGCGc -3'
miRNA:   3'- gUGCUguGCugCGCaaaAC-GCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 60857 0.67 0.915674
Target:  5'- gGCGACGgGAuCGCGUccuccgaaGgGGGGCGg -3'
miRNA:   3'- gUGCUGUgCU-GCGCAaaa-----CgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 65747 0.67 0.915674
Target:  5'- -cCGGCAUGAUGCuGgcggUGcCGGGGCu -3'
miRNA:   3'- guGCUGUGCUGCG-Caaa-AC-GCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 121534 0.67 0.912146
Target:  5'- aCACGGuCGCGGCGCugcgccuggcGUGGGGCc -3'
miRNA:   3'- -GUGCU-GUGCUGCGcaaaa-----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 113127 0.67 0.909746
Target:  5'- gACGAgGCcGCGUGUg--GCGGGGa- -3'
miRNA:   3'- gUGCUgUGcUGCGCAaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 28656 0.67 0.909746
Target:  5'- cCGCGACcgguuccgGCGcCGCGUg--GCGGcGGCc -3'
miRNA:   3'- -GUGCUG--------UGCuGCGCAaaaCGCC-CCGu -5'
5327 5' -55.1 NC_001798.1 + 34097 0.67 0.909746
Target:  5'- -gUGAC-CGGCGCGUggggGCGguGGGCGu -3'
miRNA:   3'- guGCUGuGCUGCGCAaaa-CGC--CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 78386 0.67 0.909746
Target:  5'- aCGCG-CugGuCGCGUgc-GCGGcGGCGu -3'
miRNA:   3'- -GUGCuGugCuGCGCAaaaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 150368 0.67 0.909746
Target:  5'- -cCGGCACGGCGgGcg--GCGcGGGCc -3'
miRNA:   3'- guGCUGUGCUGCgCaaaaCGC-CCCGu -5'
5327 5' -55.1 NC_001798.1 + 148391 0.67 0.90914
Target:  5'- gGCGugGCGGgcaggugUGCGg---GCGGGGUg -3'
miRNA:   3'- gUGCugUGCU-------GCGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 148284 0.67 0.90914
Target:  5'- gGCGugGCGGgcaggugUGCGg---GCGGGGUg -3'
miRNA:   3'- gUGCugUGCU-------GCGCaaaaCGCCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.