miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 14995 0.66 0.936995
Target:  5'- gGgGGgGCGAgGCGUgUUG-GGGGCGa -3'
miRNA:   3'- gUgCUgUGCUgCGCAaAACgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 15885 0.67 0.915674
Target:  5'- gCAgGGCGCGucgaaacCGCGg---GCGGGGUg -3'
miRNA:   3'- -GUgCUGUGCu------GCGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 16050 0.67 0.903582
Target:  5'- aGCGACGCGugGUagGUcgcUG-GGGGCGg -3'
miRNA:   3'- gUGCUGUGCugCG--CAaa-ACgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 16622 0.68 0.883695
Target:  5'- gACGG-ACGACGCGc----CGGGGCAg -3'
miRNA:   3'- gUGCUgUGCUGCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 19140 0.74 0.545843
Target:  5'- cCACGAagaccaACGACGCGUgg-GUGGGGgAa -3'
miRNA:   3'- -GUGCUg-----UGCUGCGCAaaaCGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 19842 0.67 0.890553
Target:  5'- gCGCGACACG-CGCc-----CGGGGCGg -3'
miRNA:   3'- -GUGCUGUGCuGCGcaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 21826 0.69 0.838038
Target:  5'- cCGCGGgAUGACGCGggccccggGCaGGGCGc -3'
miRNA:   3'- -GUGCUgUGCUGCGCaaaa----CGcCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 21963 0.68 0.846156
Target:  5'- gCGCGGgAUGACGCGggccccggGCaGGGCGc -3'
miRNA:   3'- -GUGCUgUGCUGCGCaaaa----CGcCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 22331 0.71 0.716438
Target:  5'- cCACgGACGCGgacGCGCGggcgucgggGCGGGGCc -3'
miRNA:   3'- -GUG-CUGUGC---UGCGCaaaa-----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 22725 0.74 0.565923
Target:  5'- gACGACgACGACGCaGggccGCGGGGCc -3'
miRNA:   3'- gUGCUG-UGCUGCG-CaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 23205 0.67 0.903582
Target:  5'- gACGAcCGCGACGCGggccGCuGGGUc -3'
miRNA:   3'- gUGCU-GUGCUGCGCaaaaCGcCCCGu -5'
5327 5' -55.1 NC_001798.1 + 23243 0.67 0.915674
Target:  5'- gACGACGuc-CGCGguccGCGGGGCGu -3'
miRNA:   3'- gUGCUGUgcuGCGCaaaaCGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 24536 0.66 0.936995
Target:  5'- gACGACgACGACGaCGgcgccgGCGGuGGUg -3'
miRNA:   3'- gUGCUG-UGCUGC-GCaaaa--CGCC-CCGu -5'
5327 5' -55.1 NC_001798.1 + 24569 0.68 0.883695
Target:  5'- gGCGGC-CGGCGCGcggagGCGGGccGCGu -3'
miRNA:   3'- gUGCUGuGCUGCGCaaaa-CGCCC--CGU- -5'
5327 5' -55.1 NC_001798.1 + 26335 0.68 0.8618
Target:  5'- uGgGGCGCGACGcCGUgc-GCGGcGGCc -3'
miRNA:   3'- gUgCUGUGCUGC-GCAaaaCGCC-CCGu -5'
5327 5' -55.1 NC_001798.1 + 27044 0.67 0.903582
Target:  5'- gGCGGCACGucuccCGCGccc-GCGGGGgGu -3'
miRNA:   3'- gUGCUGUGCu----GCGCaaaaCGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 28656 0.67 0.909746
Target:  5'- cCGCGACcgguuccgGCGcCGCGUg--GCGGcGGCc -3'
miRNA:   3'- -GUGCUG--------UGCuGCGCAaaaCGCC-CCGu -5'
5327 5' -55.1 NC_001798.1 + 31145 0.66 0.932024
Target:  5'- -cCGGCGCgGGgGCGgcggUGCGgGGGCGa -3'
miRNA:   3'- guGCUGUG-CUgCGCaaa-ACGC-CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 31774 0.67 0.903582
Target:  5'- gCGCGAC-CGACGCGc---GCGGGuCGg -3'
miRNA:   3'- -GUGCUGuGCUGCGCaaaaCGCCCcGU- -5'
5327 5' -55.1 NC_001798.1 + 33893 1.09 0.003962
Target:  5'- aCACGACACGACGCGUUUUGCGGGGCAu -3'
miRNA:   3'- -GUGCUGUGCUGCGCAAAACGCCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.