miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 22331 0.71 0.716438
Target:  5'- cCACgGACGCGgacGCGCGggcgucgggGCGGGGCc -3'
miRNA:   3'- -GUG-CUGUGC---UGCGCaaaa-----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 1541 0.71 0.728329
Target:  5'- gCACGGCGCGGCG-GUacucgcGCGGGGaCAu -3'
miRNA:   3'- -GUGCUGUGCUGCgCAaaa---CGCCCC-GU- -5'
5327 5' -55.1 NC_001798.1 + 93741 0.7 0.747873
Target:  5'- aCACGACGCuGAUGCGgc-UGCGGGcccGCc -3'
miRNA:   3'- -GUGCUGUG-CUGCGCaaaACGCCC---CGu -5'
5327 5' -55.1 NC_001798.1 + 2663 0.7 0.757497
Target:  5'- gCGCGccuccCGCGGCGCGgag-GCGGGcGCGg -3'
miRNA:   3'- -GUGCu----GUGCUGCGCaaaaCGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 102753 0.7 0.758454
Target:  5'- gGCGACcuGCGGCGCGggaacgcucgcgGCGGGGgAu -3'
miRNA:   3'- gUGCUG--UGCUGCGCaaaa--------CGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 74038 0.7 0.764168
Target:  5'- gGCGGCGCGcggcggccugcguuGCGUGUUUUcGCGGGuGUAc -3'
miRNA:   3'- gUGCUGUGC--------------UGCGCAAAA-CGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 86171 0.7 0.794791
Target:  5'- gCGCGACGCGGCcccGCGUUUUGCGcaGUu -3'
miRNA:   3'- -GUGCUGUGCUG---CGCAAAACGCccCGu -5'
5327 5' -55.1 NC_001798.1 + 3200 0.7 0.794791
Target:  5'- -cCGGC-CGGCGCGgag-GCGGGcGCGg -3'
miRNA:   3'- guGCUGuGCUGCGCaaaaCGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 132693 0.69 0.803768
Target:  5'- -cCGACGCGGCGCaggc-GCGGGGg- -3'
miRNA:   3'- guGCUGUGCUGCGcaaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 72574 0.69 0.803768
Target:  5'- gCGCGcGCugGuCGCGUcccucGCGGGGCu -3'
miRNA:   3'- -GUGC-UGugCuGCGCAaaa--CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 91804 0.69 0.803768
Target:  5'- gCGCGGgGCGugGggacCGUgg-GCGGGGCc -3'
miRNA:   3'- -GUGCUgUGCugC----GCAaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 96969 0.69 0.803768
Target:  5'- gCGCuGGCGCGGacCGCGgcgggcgGCGGGGCc -3'
miRNA:   3'- -GUG-CUGUGCU--GCGCaaaa---CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 84720 0.69 0.803768
Target:  5'- gCACGcACGCGGuguccUGCGUa-UGUGGGGCGg -3'
miRNA:   3'- -GUGC-UGUGCU-----GCGCAaaACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 12023 0.69 0.803768
Target:  5'- aACGcCACGGCGgGgcg-GCGgGGGCAu -3'
miRNA:   3'- gUGCuGUGCUGCgCaaaaCGC-CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 153001 0.69 0.81259
Target:  5'- -cCGGCGCGGgGCGgucgcCGGGGCGg -3'
miRNA:   3'- guGCUGUGCUgCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 34587 0.69 0.81259
Target:  5'- aCGCGGCGCGGCGUcucgGUgg-GaCGcGGGCAa -3'
miRNA:   3'- -GUGCUGUGCUGCG----CAaaaC-GC-CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 102206 0.69 0.824663
Target:  5'- gCGCGGCGCGccgggagucgaccggGCGCGgcu--CGGGGCGg -3'
miRNA:   3'- -GUGCUGUGC---------------UGCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 3311 0.69 0.838038
Target:  5'- gACGGCAaCGGgGCGgcg-GCGGcGGCGg -3'
miRNA:   3'- gUGCUGU-GCUgCGCaaaaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 138755 0.69 0.838038
Target:  5'- gGCGAC-CGugGCcagcUGcCGGGGCAg -3'
miRNA:   3'- gUGCUGuGCugCGcaaaAC-GCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 21826 0.69 0.838038
Target:  5'- cCGCGGgAUGACGCGggccccggGCaGGGCGc -3'
miRNA:   3'- -GUGCUgUGCUGCGCaaaa----CGcCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.