miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 58 0.66 0.946224
Target:  5'- gGgGGCGCGAagGCGggcgGCGGcGGCGg -3'
miRNA:   3'- gUgCUGUGCUg-CGCaaaaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 1226 0.67 0.903582
Target:  5'- cCGCGGC-CGACgcccaGCGUaucUGCGgGGGCGg -3'
miRNA:   3'- -GUGCUGuGCUG-----CGCAaa-ACGC-CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 1541 0.71 0.728329
Target:  5'- gCACGGCGCGGCG-GUacucgcGCGGGGaCAu -3'
miRNA:   3'- -GUGCUGUGCUGCgCAaaa---CGCCCC-GU- -5'
5327 5' -55.1 NC_001798.1 + 1627 0.68 0.883695
Target:  5'- cCGCGGCagaggcgcagcgGCGGCGCGU----CGGGGUAc -3'
miRNA:   3'- -GUGCUG------------UGCUGCGCAaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 2249 0.71 0.694379
Target:  5'- gGCGGCG-GGCGCGccgccgggggGCGGGGCGg -3'
miRNA:   3'- gUGCUGUgCUGCGCaaaa------CGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 2514 0.75 0.50643
Target:  5'- gGCGGCcgcgGCGGCgGCGUcg-GCGGGGCGg -3'
miRNA:   3'- gUGCUG----UGCUG-CGCAaaaCGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 2544 0.66 0.920805
Target:  5'- gGgGGCGCGGCccccgcgggagggGCGgcc-GCGGGGCGg -3'
miRNA:   3'- gUgCUGUGCUG-------------CGCaaaaCGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 2628 0.66 0.941728
Target:  5'- gGCGGCGCccuGGC-CGgg--GCGGGGCu -3'
miRNA:   3'- gUGCUGUG---CUGcGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 2663 0.7 0.757497
Target:  5'- gCGCGccuccCGCGGCGCGgag-GCGGGcGCGg -3'
miRNA:   3'- -GUGCu----GUGCUGCGCaaaaCGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 2957 0.73 0.586188
Target:  5'- gCGCaGGCGgGGCGCGUcggcgugcgGCGGGGCGg -3'
miRNA:   3'- -GUG-CUGUgCUGCGCAaaa------CGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 3200 0.7 0.794791
Target:  5'- -cCGGC-CGGCGCGgag-GCGGGcGCGg -3'
miRNA:   3'- guGCUGuGCUGCGCaaaaCGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 3311 0.69 0.838038
Target:  5'- gACGGCAaCGGgGCGgcg-GCGGcGGCGg -3'
miRNA:   3'- gUGCUGU-GCUgCGCaaaaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 4212 0.68 0.8618
Target:  5'- uGCGGCGCuGGCGgGg---GCGcGGGCGg -3'
miRNA:   3'- gUGCUGUG-CUGCgCaaaaCGC-CCCGU- -5'
5327 5' -55.1 NC_001798.1 + 6056 0.66 0.946224
Target:  5'- --aGACGcCGGCgGCGa---GCGGGGCAc -3'
miRNA:   3'- gugCUGU-GCUG-CGCaaaaCGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 7991 0.68 0.869314
Target:  5'- gCACG-CGuCGACGUGUUccuacGCGGGGUu -3'
miRNA:   3'- -GUGCuGU-GCUGCGCAAaa---CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 9142 0.67 0.899127
Target:  5'- uGCGGCACGcggGCGCGgcgccgcccgcgccGgGGGGCAg -3'
miRNA:   3'- gUGCUGUGC---UGCGCaaaa----------CgCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 9664 0.66 0.932024
Target:  5'- cCGCG-CGCGgaggGCGCGggaUGgGGGGCu -3'
miRNA:   3'- -GUGCuGUGC----UGCGCaaaACgCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 11337 0.67 0.903582
Target:  5'- gACGACgaACGGCGuCGgggUUUGgGGGGgGu -3'
miRNA:   3'- gUGCUG--UGCUGC-GCa--AAACgCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 11589 0.67 0.890553
Target:  5'- uCGCuGGC-CGAuCGCGUggaauuggGCGGGGCu -3'
miRNA:   3'- -GUG-CUGuGCU-GCGCAaaa-----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 12023 0.69 0.803768
Target:  5'- aACGcCACGGCGgGgcg-GCGgGGGCAu -3'
miRNA:   3'- gUGCuGUGCUGCgCaaaaCGC-CCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.