miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 5' -55.1 NC_001798.1 + 154396 0.66 0.946224
Target:  5'- gGgGGCGCGAagGCGggcgGCGGcGGCGg -3'
miRNA:   3'- gUgCUGUGCUg-CGCaaaaCGCC-CCGU- -5'
5327 5' -55.1 NC_001798.1 + 154080 0.66 0.921363
Target:  5'- nGCGGCACGGCuggaGCGc----CGGGGCGc -3'
miRNA:   3'- gUGCUGUGCUG----CGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 154055 0.68 0.8618
Target:  5'- gCGCGGCACGGCuggaGCGc----CGGGGCGc -3'
miRNA:   3'- -GUGCUGUGCUG----CGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 153821 0.8 0.289823
Target:  5'- gGCGGCA-GGCGCGgcgUGCGGGGCc -3'
miRNA:   3'- gUGCUGUgCUGCGCaaaACGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 153666 0.73 0.606587
Target:  5'- gCGCGGCGCGucCGCGg---GCGGGGaCGc -3'
miRNA:   3'- -GUGCUGUGCu-GCGCaaaaCGCCCC-GU- -5'
5327 5' -55.1 NC_001798.1 + 153001 0.69 0.81259
Target:  5'- -cCGGCGCGGgGCGgucgcCGGGGCGg -3'
miRNA:   3'- guGCUGUGCUgCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 150575 0.76 0.440664
Target:  5'- cCGCGGgGCGGCGCGgagacgGCGGGGgAg -3'
miRNA:   3'- -GUGCUgUGCUGCGCaaaa--CGCCCCgU- -5'
5327 5' -55.1 NC_001798.1 + 150429 0.75 0.497726
Target:  5'- gGCGGCGCGGgGCGgacuccggacgcGCGGGGCGa -3'
miRNA:   3'- gUGCUGUGCUgCGCaaaa--------CGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 150368 0.67 0.909746
Target:  5'- -cCGGCACGGCGgGcg--GCGcGGGCc -3'
miRNA:   3'- guGCUGUGCUGCgCaaaaCGC-CCCGu -5'
5327 5' -55.1 NC_001798.1 + 149984 0.66 0.921363
Target:  5'- gCGCGGCGCc-CGCGgacgcCGGGGCGa -3'
miRNA:   3'- -GUGCUGUGcuGCGCaaaacGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 148438 0.68 0.854079
Target:  5'- --gGGCACGG-GCGUaagUGCGGGuGCAu -3'
miRNA:   3'- gugCUGUGCUgCGCAaa-ACGCCC-CGU- -5'
5327 5' -55.1 NC_001798.1 + 148391 0.67 0.90914
Target:  5'- gGCGugGCGGgcaggugUGCGg---GCGGGGUg -3'
miRNA:   3'- gUGCugUGCU-------GCGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 148284 0.67 0.90914
Target:  5'- gGCGugGCGGgcaggugUGCGg---GCGGGGUg -3'
miRNA:   3'- gUGCugUGCU-------GCGCaaaaCGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 142172 0.66 0.946224
Target:  5'- aGgGACGCG-CGCGguucugacGCGGGGUc -3'
miRNA:   3'- gUgCUGUGCuGCGCaaaa----CGCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 139352 0.66 0.921363
Target:  5'- uGCGGCcAUGGCgGCGUccgGCGGGGa- -3'
miRNA:   3'- gUGCUG-UGCUG-CGCAaaaCGCCCCgu -5'
5327 5' -55.1 NC_001798.1 + 138755 0.69 0.838038
Target:  5'- gGCGAC-CGugGCcagcUGcCGGGGCAg -3'
miRNA:   3'- gUGCUGuGCugCGcaaaAC-GCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 135958 0.67 0.888519
Target:  5'- gCugGACGCggagcaauacuggaGACGCGUcgUGCgcguaugucccgGGGGCGg -3'
miRNA:   3'- -GugCUGUG--------------CUGCGCAaaACG------------CCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 135450 0.67 0.915674
Target:  5'- gGCGGCACcggGGCuGCGUUcUG-GGGGCu -3'
miRNA:   3'- gUGCUGUG---CUG-CGCAAaACgCCCCGu -5'
5327 5' -55.1 NC_001798.1 + 134932 0.78 0.363756
Target:  5'- -cCGAguCGGCGCGUgaccuggUGCGGGGCGc -3'
miRNA:   3'- guGCUguGCUGCGCAaa-----ACGCCCCGU- -5'
5327 5' -55.1 NC_001798.1 + 132693 0.69 0.803768
Target:  5'- -cCGACGCGGCGCaggc-GCGGGGg- -3'
miRNA:   3'- guGCUGUGCUGCGcaaaaCGCCCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.