miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 3' -55.3 NC_001798.1 + 57354 0.66 0.919813
Target:  5'- --aCCUgacgaCGCCGCUGCUGCgGCgGCu -3'
miRNA:   3'- aaaGGAag---GCGGUGGUGAUGgUGgUG- -5'
5328 3' -55.3 NC_001798.1 + 57614 0.69 0.770458
Target:  5'- -gUCCggcgaUCgCGcCCGCCACU-CCACCAUg -3'
miRNA:   3'- aaAGGa----AG-GC-GGUGGUGAuGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 63341 0.68 0.816591
Target:  5'- -gUCCUgcuauaCGCCGCCccCUcCCACCACc -3'
miRNA:   3'- aaAGGAag----GCGGUGGu-GAuGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 68182 0.66 0.901475
Target:  5'- -gUCCUguUUgGCCACCcccGCgccgACCAUCGCg -3'
miRNA:   3'- aaAGGA--AGgCGGUGG---UGa---UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 68652 0.67 0.873658
Target:  5'- --cCCggcugCgCGCCGCCGCggacgcCCGCCGCg -3'
miRNA:   3'- aaaGGaa---G-GCGGUGGUGau----GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 70848 0.78 0.3003
Target:  5'- -cUCCggaagaguggugcgCCGCCGCCACcACCACCGCc -3'
miRNA:   3'- aaAGGaa------------GGCGGUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 72201 0.67 0.842253
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCGCC-Cg -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGGUGGuG- -5'
5328 3' -55.3 NC_001798.1 + 72246 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 72276 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 72306 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 72336 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 72732 0.75 0.438352
Target:  5'- ------aCCGCCGCCGCgGCCGCCGCc -3'
miRNA:   3'- aaaggaaGGCGGUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 73053 0.81 0.212851
Target:  5'- uUUUCCggcUCUGCCGCCGCUuucuCCGCCGCc -3'
miRNA:   3'- -AAAGGa--AGGCGGUGGUGAu---GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 73398 0.68 0.825331
Target:  5'- -gUCCU--CGCCcCCACUcuccucaccgacGCCACCACc -3'
miRNA:   3'- aaAGGAagGCGGuGGUGA------------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 73508 0.66 0.888036
Target:  5'- -gUCCcUCUGCC-CCG--ACCGCCGCc -3'
miRNA:   3'- aaAGGaAGGCGGuGGUgaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 74126 0.68 0.833887
Target:  5'- --gCCgugCUgGCCGCCGCgacCCACCGCa -3'
miRNA:   3'- aaaGGaa-GG-CGGUGGUGau-GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 74772 0.66 0.910308
Target:  5'- --gCCgcgUCCGCCGCCGg-GCCcccgggggucccagcGCCACu -3'
miRNA:   3'- aaaGGa--AGGCGGUGGUgaUGG---------------UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 76753 0.66 0.913947
Target:  5'- gUUCCacgCCGCCGCCGaaACCuacGCCGa -3'
miRNA:   3'- aAAGGaa-GGCGGUGGUgaUGG---UGGUg -5'
5328 3' -55.3 NC_001798.1 + 76797 0.7 0.710979
Target:  5'- -cUCCccCCGCuCGCCGCcauCCACCGCc -3'
miRNA:   3'- aaAGGaaGGCG-GUGGUGau-GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 83794 0.67 0.880962
Target:  5'- -gUCCcgCCGCCGCUGCUGgC-CCAg -3'
miRNA:   3'- aaAGGaaGGCGGUGGUGAUgGuGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.