miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 3' -55.3 NC_001798.1 + 26431 0.67 0.842253
Target:  5'- --cCCgUCCGCCGCCGaaGCCGUCGCc -3'
miRNA:   3'- aaaGGaAGGCGGUGGUgaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 27041 0.71 0.637502
Target:  5'- --cCCUUCCGCCcucgagcucuucgGCUGCUcguaaaaaugcgGCCGCCGCa -3'
miRNA:   3'- aaaGGAAGGCGG-------------UGGUGA------------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 27865 0.67 0.85042
Target:  5'- --cCCcUCCGUCGCgACggcccuCCACCACu -3'
miRNA:   3'- aaaGGaAGGCGGUGgUGau----GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 30959 0.67 0.880962
Target:  5'- --gCCUUCgGCCACCuggaaGCUGCCuCCc- -3'
miRNA:   3'- aaaGGAAGgCGGUGG-----UGAUGGuGGug -5'
5328 3' -55.3 NC_001798.1 + 31048 0.69 0.770458
Target:  5'- aUUUUCUUCuuuaaccgcgagCGCCGCUACUgcGCCACCGu -3'
miRNA:   3'- -AAAGGAAG------------GCGGUGGUGA--UGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 32447 0.66 0.901475
Target:  5'- -gUCCUg-CGCCAUCACUACgggACCAa -3'
miRNA:   3'- aaAGGAagGCGGUGGUGAUGg--UGGUg -5'
5328 3' -55.3 NC_001798.1 + 33633 0.66 0.887339
Target:  5'- --cCCUUCCGgCACCgggaaggGCUcgcACCGCCGg -3'
miRNA:   3'- aaaGGAAGGCgGUGG-------UGA---UGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 34448 0.66 0.907834
Target:  5'- -gUCCUggCUGCUguuGCC-CUcgACCGCCACg -3'
miRNA:   3'- aaAGGAa-GGCGG---UGGuGA--UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 36096 0.71 0.628106
Target:  5'- -gUCUUUCUGCCgACCAUccGCCGCCAg -3'
miRNA:   3'- aaAGGAAGGCGG-UGGUGa-UGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 36791 0.69 0.741164
Target:  5'- -aUCCa-CgGCCACCGCUGCCAgCGa -3'
miRNA:   3'- aaAGGaaGgCGGUGGUGAUGGUgGUg -5'
5328 3' -55.3 NC_001798.1 + 38449 0.66 0.919813
Target:  5'- --cCCUggaCCGCCACCgagACUGCCGgauugaCGCg -3'
miRNA:   3'- aaaGGAa--GGCGGUGG---UGAUGGUg-----GUG- -5'
5328 3' -55.3 NC_001798.1 + 41514 0.66 0.913947
Target:  5'- --gUCUUCCGCC-CCAC-ACCcaGCCGg -3'
miRNA:   3'- aaaGGAAGGCGGuGGUGaUGG--UGGUg -5'
5328 3' -55.3 NC_001798.1 + 42019 0.7 0.700764
Target:  5'- cUUUCCccCUGCCuucCCACUgacuaACCGCCACg -3'
miRNA:   3'- -AAAGGaaGGCGGu--GGUGA-----UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 44049 0.68 0.833887
Target:  5'- -----gUCCGCCGugcguCCGCUACCGCCu- -3'
miRNA:   3'- aaaggaAGGCGGU-----GGUGAUGGUGGug -5'
5328 3' -55.3 NC_001798.1 + 49311 0.66 0.901475
Target:  5'- --gCCUgcagcaCUGCCGcCCGCU-CCGCCGCc -3'
miRNA:   3'- aaaGGAa-----GGCGGU-GGUGAuGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 49489 0.69 0.741164
Target:  5'- -gUCCcgcgcggcaUCCGCCucuucgGCCGCgGCCGCCGCg -3'
miRNA:   3'- aaAGGa--------AGGCGG------UGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 51841 0.77 0.36036
Target:  5'- --gCCUgCCGCCGCCGCU-CgGCCACa -3'
miRNA:   3'- aaaGGAaGGCGGUGGUGAuGgUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 54060 0.67 0.873658
Target:  5'- -aUCCgcgCCGaCGCCAacGCCGCCAUg -3'
miRNA:   3'- aaAGGaa-GGCgGUGGUgaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 55086 0.7 0.731188
Target:  5'- -cUCCUUCCGCUucuccuccgacGCCAUcucgACCACCu- -3'
miRNA:   3'- aaAGGAAGGCGG-----------UGGUGa---UGGUGGug -5'
5328 3' -55.3 NC_001798.1 + 55710 0.67 0.873658
Target:  5'- ----gUUCgGCCACCGCUACUcCCAg -3'
miRNA:   3'- aaaggAAGgCGGUGGUGAUGGuGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.