miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 3' -55.3 NC_001798.1 + 99912 0.72 0.596839
Target:  5'- --cCCcgCCGCCgacACCACcGCCGCCGCc -3'
miRNA:   3'- aaaGGaaGGCGG---UGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 84487 0.72 0.607244
Target:  5'- gUUUCUgUCCGCgGCCaaACUgcacGCCGCCACg -3'
miRNA:   3'- -AAAGGaAGGCGgUGG--UGA----UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 36096 0.71 0.628106
Target:  5'- -gUCUUUCUGCCgACCAUccGCCGCCAg -3'
miRNA:   3'- aaAGGAAGGCGG-UGGUGa-UGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 27041 0.71 0.637502
Target:  5'- --cCCUUCCGCCcucgagcucuucgGCUGCUcguaaaaaugcgGCCGCCGCa -3'
miRNA:   3'- aaaGGAAGGCGG-------------UGGUGA------------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 127121 0.71 0.648981
Target:  5'- --cCCUgCCGCCcgcCCGCcGCCGCCGCc -3'
miRNA:   3'- aaaGGAaGGCGGu--GGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 130529 0.71 0.659401
Target:  5'- --gCCaUgaGCCGCCGCUACgACCGCg -3'
miRNA:   3'- aaaGGaAggCGGUGGUGAUGgUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 4086 0.71 0.667722
Target:  5'- -gUCCUgcccUCCGCCGCCGCggcgucuucgcCCACCcGCg -3'
miRNA:   3'- aaAGGA----AGGCGGUGGUGau---------GGUGG-UG- -5'
5328 3' -55.3 NC_001798.1 + 8758 0.71 0.669799
Target:  5'- -cUCCggcagCaCGCCgACCACcGCCGCCACc -3'
miRNA:   3'- aaAGGaa---G-GCGG-UGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 131437 0.71 0.680165
Target:  5'- --cCCcgCCGaCACCACcACCACCACc -3'
miRNA:   3'- aaaGGaaGGCgGUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 9285 0.7 0.69049
Target:  5'- --cCCggCCGCCGCgCGCccccgcccgGCCGCCGCg -3'
miRNA:   3'- aaaGGaaGGCGGUG-GUGa--------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 9327 0.7 0.69049
Target:  5'- --cCCggCCGCCGCgCGCccccgcccgGCCGCCGCg -3'
miRNA:   3'- aaaGGaaGGCGGUG-GUGa--------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 9243 0.7 0.69049
Target:  5'- --cCCggCCGCCGCgCGCccccgcccgGCCGCCGCg -3'
miRNA:   3'- aaaGGaaGGCGGUG-GUGa--------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 87621 0.7 0.700764
Target:  5'- -gUCCUUCucggCGCCGCCcCUGgCAUCGCg -3'
miRNA:   3'- aaAGGAAG----GCGGUGGuGAUgGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 3868 0.7 0.700764
Target:  5'- gUUCCgcgggUCGCCcCCGC-ACCGCCGCc -3'
miRNA:   3'- aAAGGaa---GGCGGuGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 42019 0.7 0.700764
Target:  5'- cUUUCCccCUGCCuucCCACUgacuaACCGCCACg -3'
miRNA:   3'- -AAAGGaaGGCGGu--GGUGA-----UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 149339 0.7 0.700764
Target:  5'- --gUCgcgCCGCCGCCGCU-CCGCCcGCg -3'
miRNA:   3'- aaaGGaa-GGCGGUGGUGAuGGUGG-UG- -5'
5328 3' -55.3 NC_001798.1 + 76797 0.7 0.710979
Target:  5'- -cUCCccCCGCuCGCCGCcauCCACCGCc -3'
miRNA:   3'- aaAGGaaGGCG-GUGGUGau-GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 19837 0.7 0.710979
Target:  5'- --aCCgugCCgGCCGCCGCcGCCGCCGa -3'
miRNA:   3'- aaaGGaa-GG-CGGUGGUGaUGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 153567 0.7 0.721123
Target:  5'- --aCCUcCaCGCCGCCGC--CCGCCGCg -3'
miRNA:   3'- aaaGGAaG-GCGGUGGUGauGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 15700 0.7 0.731188
Target:  5'- --aCCagCCGCUgcggcuggagGCCGCggGCCACCACg -3'
miRNA:   3'- aaaGGaaGGCGG----------UGGUGa-UGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.