miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 3' -55.3 NC_001798.1 + 32447 0.66 0.901475
Target:  5'- -gUCCUg-CGCCAUCACUACgggACCAa -3'
miRNA:   3'- aaAGGAagGCGGUGGUGAUGg--UGGUg -5'
5328 3' -55.3 NC_001798.1 + 49311 0.66 0.901475
Target:  5'- --gCCUgcagcaCUGCCGcCCGCU-CCGCCGCc -3'
miRNA:   3'- aaaGGAa-----GGCGGU-GGUGAuGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 118748 0.66 0.894875
Target:  5'- -aUCgUUCa-CCACCACgccccCCACCGCg -3'
miRNA:   3'- aaAGgAAGgcGGUGGUGau---GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 73508 0.66 0.888036
Target:  5'- -gUCCcUCUGCC-CCG--ACCGCCGCc -3'
miRNA:   3'- aaAGGaAGGCGGuGGUgaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 33633 0.66 0.887339
Target:  5'- --cCCUUCCGgCACCgggaaggGCUcgcACCGCCGg -3'
miRNA:   3'- aaaGGAAGGCgGUGG-------UGA---UGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 91701 0.67 0.880962
Target:  5'- gUUCCUUCCcuuuCC-CCA--GCCGCCACc -3'
miRNA:   3'- aAAGGAAGGc---GGuGGUgaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 83794 0.67 0.880962
Target:  5'- -gUCCcgCCGCCGCUGCUGgC-CCAg -3'
miRNA:   3'- aaAGGaaGGCGGUGGUGAUgGuGGUg -5'
5328 3' -55.3 NC_001798.1 + 30959 0.67 0.880962
Target:  5'- --gCCUUCgGCCACCuggaaGCUGCCuCCc- -3'
miRNA:   3'- aaaGGAAGgCGGUGG-----UGAUGGuGGug -5'
5328 3' -55.3 NC_001798.1 + 3934 0.67 0.880962
Target:  5'- -------gCGCCGCCGCUGCUGCUGCu -3'
miRNA:   3'- aaaggaagGCGGUGGUGAUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 55710 0.67 0.873658
Target:  5'- ----gUUCgGCCACCGCUACUcCCAg -3'
miRNA:   3'- aaaggAAGgCGGUGGUGAUGGuGGUg -5'
5328 3' -55.3 NC_001798.1 + 126851 0.67 0.873658
Target:  5'- --cCCagCCGcCCGCCAUgucCCGCCGCc -3'
miRNA:   3'- aaaGGaaGGC-GGUGGUGau-GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 54060 0.67 0.873658
Target:  5'- -aUCCgcgCCGaCGCCAacGCCGCCAUg -3'
miRNA:   3'- aaAGGaa-GGCgGUGGUgaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 68652 0.67 0.873658
Target:  5'- --cCCggcugCgCGCCGCCGCggacgcCCGCCGCg -3'
miRNA:   3'- aaaGGaa---G-GCGGUGGUGau----GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 9010 0.67 0.858381
Target:  5'- --cCCgcgccCCGCCGCCACacCCACgGCa -3'
miRNA:   3'- aaaGGaa---GGCGGUGGUGauGGUGgUG- -5'
5328 3' -55.3 NC_001798.1 + 24302 0.67 0.858381
Target:  5'- -cUCCcgUCUgggcccccgGCCACUGCUGcuCCACCACg -3'
miRNA:   3'- aaAGGa-AGG---------CGGUGGUGAU--GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 128680 0.67 0.858381
Target:  5'- --cCCgaCgCGCCGCCGCUgcGCCucuGCCGCg -3'
miRNA:   3'- aaaGGaaG-GCGGUGGUGA--UGG---UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 100120 0.67 0.85042
Target:  5'- --gCCUcCCGCC-CCGCaACC-CCGCg -3'
miRNA:   3'- aaaGGAaGGCGGuGGUGaUGGuGGUG- -5'
5328 3' -55.3 NC_001798.1 + 27865 0.67 0.85042
Target:  5'- --cCCcUCCGUCGCgACggcccuCCACCACu -3'
miRNA:   3'- aaaGGaAGGCGGUGgUGau----GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 20224 0.67 0.849612
Target:  5'- -gUCC-UCCGCC-UCGCUcgccgucACCAUCACg -3'
miRNA:   3'- aaAGGaAGGCGGuGGUGA-------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 72201 0.67 0.842253
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCGCC-Cg -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGGUGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.