miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 3' -55.3 NC_001798.1 + 72201 0.67 0.842253
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCGCC-Cg -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGGUGGuG- -5'
5328 3' -55.3 NC_001798.1 + 96426 0.67 0.842253
Target:  5'- -cUCCgucaggcCCGCCGCCGCgugGCCcCCGa -3'
miRNA:   3'- aaAGGaa-----GGCGGUGGUGa--UGGuGGUg -5'
5328 3' -55.3 NC_001798.1 + 95129 0.68 0.833887
Target:  5'- --gCCgUCC-CCACCACccuCCGCCGCc -3'
miRNA:   3'- aaaGGaAGGcGGUGGUGau-GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 145263 0.68 0.833887
Target:  5'- -cUCCagUCCGCguacaGCuCGCUGuCCGCCACg -3'
miRNA:   3'- aaAGGa-AGGCGg----UG-GUGAU-GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 111660 0.68 0.833887
Target:  5'- -cUCgggcgCCGCCGCCGCguccGCgACCACg -3'
miRNA:   3'- aaAGgaa--GGCGGUGGUGa---UGgUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 96713 0.68 0.833887
Target:  5'- --gCCaUCCGCgGCCGC-ACCAgCACc -3'
miRNA:   3'- aaaGGaAGGCGgUGGUGaUGGUgGUG- -5'
5328 3' -55.3 NC_001798.1 + 44049 0.68 0.833887
Target:  5'- -----gUCCGCCGugcguCCGCUACCGCCu- -3'
miRNA:   3'- aaaggaAGGCGGU-----GGUGAUGGUGGug -5'
5328 3' -55.3 NC_001798.1 + 123276 0.68 0.833887
Target:  5'- -cUCCgcgCCGCC-CCGCggGCCccggGCCGCu -3'
miRNA:   3'- aaAGGaa-GGCGGuGGUGa-UGG----UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 74126 0.68 0.833887
Target:  5'- --gCCgugCUgGCCGCCGCgacCCACCGCa -3'
miRNA:   3'- aaaGGaa-GG-CGGUGGUGau-GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 1493 0.68 0.833887
Target:  5'- ------cCCGCgCGCCGCcGCCGCCGCc -3'
miRNA:   3'- aaaggaaGGCG-GUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 102819 0.68 0.825331
Target:  5'- --cCCgugggggCCGCCGCCG-UGCCGCUGCu -3'
miRNA:   3'- aaaGGaa-----GGCGGUGGUgAUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 73398 0.68 0.825331
Target:  5'- -gUCCU--CGCCcCCACUcuccucaccgacGCCACCACc -3'
miRNA:   3'- aaAGGAagGCGGuGGUGA------------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 63341 0.68 0.816591
Target:  5'- -gUCCUgcuauaCGCCGCCccCUcCCACCACc -3'
miRNA:   3'- aaAGGAag----GCGGUGGu-GAuGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 130361 0.68 0.798598
Target:  5'- ------cCCGCCGCCGCcGCCGCCcCg -3'
miRNA:   3'- aaaggaaGGCGGUGGUGaUGGUGGuG- -5'
5328 3' -55.3 NC_001798.1 + 1389 0.68 0.798598
Target:  5'- -gUCCgaugaCCGCCuCgGCcGCCGCCACg -3'
miRNA:   3'- aaAGGaa---GGCGGuGgUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 31048 0.69 0.770458
Target:  5'- aUUUUCUUCuuuaaccgcgagCGCCGCUACUgcGCCACCGu -3'
miRNA:   3'- -AAAGGAAG------------GCGGUGGUGA--UGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 57614 0.69 0.770458
Target:  5'- -gUCCggcgaUCgCGcCCGCCACU-CCACCAUg -3'
miRNA:   3'- aaAGGa----AG-GC-GGUGGUGAuGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 106380 0.69 0.751041
Target:  5'- --cCCggggCCGCC-CCGCggggcgUGCCGCCGCg -3'
miRNA:   3'- aaaGGaa--GGCGGuGGUG------AUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 118843 0.69 0.750058
Target:  5'- -aUCCUccguuuuUCCGCUuuCCACcccGCCGCCACc -3'
miRNA:   3'- aaAGGA-------AGGCGGu-GGUGa--UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 49489 0.69 0.741164
Target:  5'- -gUCCcgcgcggcaUCCGCCucuucgGCCGCgGCCGCCGCg -3'
miRNA:   3'- aaAGGa--------AGGCGG------UGGUGaUGGUGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.