Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5328 | 3' | -55.3 | NC_001798.1 | + | 72201 | 0.67 | 0.842253 |
Target: 5'- --cCCUgccCCaGCCGCCcCUGCCGCC-Cg -3' miRNA: 3'- aaaGGAa--GG-CGGUGGuGAUGGUGGuG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 96426 | 0.67 | 0.842253 |
Target: 5'- -cUCCgucaggcCCGCCGCCGCgugGCCcCCGa -3' miRNA: 3'- aaAGGaa-----GGCGGUGGUGa--UGGuGGUg -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 95129 | 0.68 | 0.833887 |
Target: 5'- --gCCgUCC-CCACCACccuCCGCCGCc -3' miRNA: 3'- aaaGGaAGGcGGUGGUGau-GGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 145263 | 0.68 | 0.833887 |
Target: 5'- -cUCCagUCCGCguacaGCuCGCUGuCCGCCACg -3' miRNA: 3'- aaAGGa-AGGCGg----UG-GUGAU-GGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 111660 | 0.68 | 0.833887 |
Target: 5'- -cUCgggcgCCGCCGCCGCguccGCgACCACg -3' miRNA: 3'- aaAGgaa--GGCGGUGGUGa---UGgUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 96713 | 0.68 | 0.833887 |
Target: 5'- --gCCaUCCGCgGCCGC-ACCAgCACc -3' miRNA: 3'- aaaGGaAGGCGgUGGUGaUGGUgGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 44049 | 0.68 | 0.833887 |
Target: 5'- -----gUCCGCCGugcguCCGCUACCGCCu- -3' miRNA: 3'- aaaggaAGGCGGU-----GGUGAUGGUGGug -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 123276 | 0.68 | 0.833887 |
Target: 5'- -cUCCgcgCCGCC-CCGCggGCCccggGCCGCu -3' miRNA: 3'- aaAGGaa-GGCGGuGGUGa-UGG----UGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 74126 | 0.68 | 0.833887 |
Target: 5'- --gCCgugCUgGCCGCCGCgacCCACCGCa -3' miRNA: 3'- aaaGGaa-GG-CGGUGGUGau-GGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 1493 | 0.68 | 0.833887 |
Target: 5'- ------cCCGCgCGCCGCcGCCGCCGCc -3' miRNA: 3'- aaaggaaGGCG-GUGGUGaUGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 102819 | 0.68 | 0.825331 |
Target: 5'- --cCCgugggggCCGCCGCCG-UGCCGCUGCu -3' miRNA: 3'- aaaGGaa-----GGCGGUGGUgAUGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 73398 | 0.68 | 0.825331 |
Target: 5'- -gUCCU--CGCCcCCACUcuccucaccgacGCCACCACc -3' miRNA: 3'- aaAGGAagGCGGuGGUGA------------UGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 63341 | 0.68 | 0.816591 |
Target: 5'- -gUCCUgcuauaCGCCGCCccCUcCCACCACc -3' miRNA: 3'- aaAGGAag----GCGGUGGu-GAuGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 130361 | 0.68 | 0.798598 |
Target: 5'- ------cCCGCCGCCGCcGCCGCCcCg -3' miRNA: 3'- aaaggaaGGCGGUGGUGaUGGUGGuG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 1389 | 0.68 | 0.798598 |
Target: 5'- -gUCCgaugaCCGCCuCgGCcGCCGCCACg -3' miRNA: 3'- aaAGGaa---GGCGGuGgUGaUGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 31048 | 0.69 | 0.770458 |
Target: 5'- aUUUUCUUCuuuaaccgcgagCGCCGCUACUgcGCCACCGu -3' miRNA: 3'- -AAAGGAAG------------GCGGUGGUGA--UGGUGGUg -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 57614 | 0.69 | 0.770458 |
Target: 5'- -gUCCggcgaUCgCGcCCGCCACU-CCACCAUg -3' miRNA: 3'- aaAGGa----AG-GC-GGUGGUGAuGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 106380 | 0.69 | 0.751041 |
Target: 5'- --cCCggggCCGCC-CCGCggggcgUGCCGCCGCg -3' miRNA: 3'- aaaGGaa--GGCGGuGGUG------AUGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 118843 | 0.69 | 0.750058 |
Target: 5'- -aUCCUccguuuuUCCGCUuuCCACcccGCCGCCACc -3' miRNA: 3'- aaAGGA-------AGGCGGu-GGUGa--UGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 49489 | 0.69 | 0.741164 |
Target: 5'- -gUCCcgcgcggcaUCCGCCucuucgGCCGCgGCCGCCGCg -3' miRNA: 3'- aaAGGa--------AGGCGG------UGGUGaUGGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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