miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 3' -55.3 NC_001798.1 + 120769 1.06 0.004246
Target:  5'- gUUUCCUUCCGCCACCACUACCACCACc -3'
miRNA:   3'- -AAAGGAAGGCGGUGGUGAUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 76753 0.66 0.913947
Target:  5'- gUUCCacgCCGCCGCCGaaACCuacGCCGa -3'
miRNA:   3'- aAAGGaa-GGCGGUGGUgaUGG---UGGUg -5'
5328 3' -55.3 NC_001798.1 + 72246 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 72276 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 72306 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 72336 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 128935 0.66 0.919813
Target:  5'- gUUCCUggggcugcuggCCGgCGCCuGCgACCGCCGCc -3'
miRNA:   3'- aAAGGAa----------GGCgGUGG-UGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 57354 0.66 0.919813
Target:  5'- --aCCUgacgaCGCCGCUGCUGCgGCgGCu -3'
miRNA:   3'- aaaGGAag---GCGGUGGUGAUGgUGgUG- -5'
5328 3' -55.3 NC_001798.1 + 151879 0.66 0.919813
Target:  5'- --gCCUcgCUGCCGCCG--GCCACgCGCa -3'
miRNA:   3'- aaaGGAa-GGCGGUGGUgaUGGUG-GUG- -5'
5328 3' -55.3 NC_001798.1 + 116249 0.66 0.913947
Target:  5'- --cCCggagucUCCGCC-CCAC--CCGCCGCg -3'
miRNA:   3'- aaaGGa-----AGGCGGuGGUGauGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 41514 0.66 0.913947
Target:  5'- --gUCUUCCGCC-CCAC-ACCcaGCCGg -3'
miRNA:   3'- aaaGGAAGGCGGuGGUGaUGG--UGGUg -5'
5328 3' -55.3 NC_001798.1 + 38449 0.66 0.919813
Target:  5'- --cCCUggaCCGCCACCgagACUGCCGgauugaCGCg -3'
miRNA:   3'- aaaGGAa--GGCGGUGG---UGAUGGUg-----GUG- -5'
5328 3' -55.3 NC_001798.1 + 119020 0.66 0.913947
Target:  5'- -cUCUcUCCGCCAuccucCCGCccgGCCGcCCACu -3'
miRNA:   3'- aaAGGaAGGCGGU-----GGUGa--UGGU-GGUG- -5'
5328 3' -55.3 NC_001798.1 + 153412 0.66 0.911531
Target:  5'- -cUCCcgCCGCgGcCCGCgcagcuccgccggGCCGCCGCg -3'
miRNA:   3'- aaAGGaaGGCGgU-GGUGa------------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 74772 0.66 0.910308
Target:  5'- --gCCgcgUCCGCCGCCGg-GCCcccgggggucccagcGCCACu -3'
miRNA:   3'- aaaGGa--AGGCGGUGGUgaUGG---------------UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 17493 0.66 0.907834
Target:  5'- -aUCCccUCCGCCACCucgACCagACUGCg -3'
miRNA:   3'- aaAGGa-AGGCGGUGGugaUGG--UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 7321 0.66 0.907834
Target:  5'- --cCCcgCCGCCGCCGCccuUugC-CCGCg -3'
miRNA:   3'- aaaGGaaGGCGGUGGUG---AugGuGGUG- -5'
5328 3' -55.3 NC_001798.1 + 84942 0.66 0.907834
Target:  5'- --gCCUguugggCCGCC-CCACggaACgGCCGCg -3'
miRNA:   3'- aaaGGAa-----GGCGGuGGUGa--UGgUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 105729 0.66 0.907834
Target:  5'- --cCCagCCGCCccuCCGCUguacGCCACCGg -3'
miRNA:   3'- aaaGGaaGGCGGu--GGUGA----UGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 34448 0.66 0.907834
Target:  5'- -gUCCUggCUGCUguuGCC-CUcgACCGCCACg -3'
miRNA:   3'- aaAGGAa-GGCGG---UGGuGA--UGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.