miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 3' -55.3 NC_001798.1 + 120769 1.06 0.004246
Target:  5'- gUUUCCUUCCGCCACCACUACCACCACc -3'
miRNA:   3'- -AAAGGAAGGCGGUGGUGAUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 129559 0.81 0.192373
Target:  5'- --gCCgacgCCGCCGCCGCgGCCGCCGCg -3'
miRNA:   3'- aaaGGaa--GGCGGUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 73053 0.81 0.212851
Target:  5'- uUUUCCggcUCUGCCGCCGCUuucuCCGCCGCc -3'
miRNA:   3'- -AAAGGa--AGGCGGUGGUGAu---GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 129817 0.79 0.246452
Target:  5'- --gCCUgcugagcUCCGCCGCCGC-GCCGCCGCg -3'
miRNA:   3'- aaaGGA-------AGGCGGUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 70848 0.78 0.3003
Target:  5'- -cUCCggaagaguggugcgCCGCCGCCACcACCACCGCc -3'
miRNA:   3'- aaAGGaa------------GGCGGUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 151600 0.78 0.314007
Target:  5'- --gCCggCCGCCGCCACcACCGCCGg -3'
miRNA:   3'- aaaGGaaGGCGGUGGUGaUGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 123136 0.77 0.344393
Target:  5'- -gUCCggagUCCGCC-CCGCgccGCCGCCGCc -3'
miRNA:   3'- aaAGGa---AGGCGGuGGUGa--UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 51841 0.77 0.36036
Target:  5'- --gCCUgCCGCCGCCGCU-CgGCCACa -3'
miRNA:   3'- aaaGGAaGGCGGUGGUGAuGgUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 126459 0.75 0.429213
Target:  5'- --cCCUUCCGCCccaccuggcgcuACgGCUGCgCACCACg -3'
miRNA:   3'- aaaGGAAGGCGG------------UGgUGAUG-GUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 72732 0.75 0.438352
Target:  5'- ------aCCGCCGCCGCgGCCGCCGCc -3'
miRNA:   3'- aaaggaaGGCGGUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 96080 0.75 0.447602
Target:  5'- -gUCCcgaggcCCGCCACCACcGCCGCCGu -3'
miRNA:   3'- aaAGGaa----GGCGGUGGUGaUGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 18425 0.75 0.456959
Target:  5'- -gUCUUUCCaCCACCAgcACCACCACc -3'
miRNA:   3'- aaAGGAAGGcGGUGGUgaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 149797 0.74 0.475982
Target:  5'- -gUCCUcgUCCGCCAUCGCgaccucgGCC-CCGCg -3'
miRNA:   3'- aaAGGA--AGGCGGUGGUGa------UGGuGGUG- -5'
5328 3' -55.3 NC_001798.1 + 133061 0.73 0.515149
Target:  5'- --cCCUUCgcgaUGCCGCCGCUGCCgucccggucuccGCCGCg -3'
miRNA:   3'- aaaGGAAG----GCGGUGGUGAUGG------------UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 9148 0.73 0.53219
Target:  5'- cUUCCUUCC-CCGCCGCgaccccgaccccgccCCACCGCc -3'
miRNA:   3'- aAAGGAAGGcGGUGGUGau-------------GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 92582 0.73 0.545358
Target:  5'- gUUCCUggcgcuguucgUCCGCUGCCACacagACCugCACc -3'
miRNA:   3'- aAAGGA-----------AGGCGGUGGUGa---UGGugGUG- -5'
5328 3' -55.3 NC_001798.1 + 16799 0.73 0.545358
Target:  5'- --cCCggUCCGCCGCgCGCUGCUcCCGCu -3'
miRNA:   3'- aaaGGa-AGGCGGUG-GUGAUGGuGGUG- -5'
5328 3' -55.3 NC_001798.1 + 126515 0.73 0.555558
Target:  5'- --gCCUgCCGCCGCCugccccccGCcGCCGCCGCg -3'
miRNA:   3'- aaaGGAaGGCGGUGG--------UGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 125938 0.72 0.576115
Target:  5'- -gUCC-UCCGCCGCCGCggGCCcggGCCGu -3'
miRNA:   3'- aaAGGaAGGCGGUGGUGa-UGG---UGGUg -5'
5328 3' -55.3 NC_001798.1 + 8853 0.72 0.58646
Target:  5'- --cCCgaCCGCCGCCGCgccCCACCGg -3'
miRNA:   3'- aaaGGaaGGCGGUGGUGau-GGUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.