Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5328 | 3' | -55.3 | NC_001798.1 | + | 72246 | 0.66 | 0.919813 |
Target: 5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3' miRNA: 3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 49311 | 0.66 | 0.901475 |
Target: 5'- --gCCUgcagcaCUGCCGcCCGCU-CCGCCGCc -3' miRNA: 3'- aaaGGAa-----GGCGGU-GGUGAuGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 34448 | 0.66 | 0.907834 |
Target: 5'- -gUCCUggCUGCUguuGCC-CUcgACCGCCACg -3' miRNA: 3'- aaAGGAa-GGCGG---UGGuGA--UGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 105729 | 0.66 | 0.907834 |
Target: 5'- --cCCagCCGCCccuCCGCUguacGCCACCGg -3' miRNA: 3'- aaaGGaaGGCGGu--GGUGA----UGGUGGUg -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 84942 | 0.66 | 0.907834 |
Target: 5'- --gCCUguugggCCGCC-CCACggaACgGCCGCg -3' miRNA: 3'- aaaGGAa-----GGCGGuGGUGa--UGgUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 7321 | 0.66 | 0.907834 |
Target: 5'- --cCCcgCCGCCGCCGCccuUugC-CCGCg -3' miRNA: 3'- aaaGGaaGGCGGUGGUG---AugGuGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 17493 | 0.66 | 0.907834 |
Target: 5'- -aUCCccUCCGCCACCucgACCagACUGCg -3' miRNA: 3'- aaAGGa-AGGCGGUGGugaUGG--UGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 74772 | 0.66 | 0.910308 |
Target: 5'- --gCCgcgUCCGCCGCCGg-GCCcccgggggucccagcGCCACu -3' miRNA: 3'- aaaGGa--AGGCGGUGGUgaUGG---------------UGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 153412 | 0.66 | 0.911531 |
Target: 5'- -cUCCcgCCGCgGcCCGCgcagcuccgccggGCCGCCGCg -3' miRNA: 3'- aaAGGaaGGCGgU-GGUGa------------UGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 119020 | 0.66 | 0.913947 |
Target: 5'- -cUCUcUCCGCCAuccucCCGCccgGCCGcCCACu -3' miRNA: 3'- aaAGGaAGGCGGU-----GGUGa--UGGU-GGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 76753 | 0.66 | 0.913947 |
Target: 5'- gUUCCacgCCGCCGCCGaaACCuacGCCGa -3' miRNA: 3'- aAAGGaa-GGCGGUGGUgaUGG---UGGUg -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 41514 | 0.66 | 0.913947 |
Target: 5'- --gUCUUCCGCC-CCAC-ACCcaGCCGg -3' miRNA: 3'- aaaGGAAGGCGGuGGUGaUGG--UGGUg -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 116249 | 0.66 | 0.913947 |
Target: 5'- --cCCggagucUCCGCC-CCAC--CCGCCGCg -3' miRNA: 3'- aaaGGa-----AGGCGGuGGUGauGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 151879 | 0.66 | 0.919813 |
Target: 5'- --gCCUcgCUGCCGCCG--GCCACgCGCa -3' miRNA: 3'- aaaGGAa-GGCGGUGGUgaUGGUG-GUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 57354 | 0.66 | 0.919813 |
Target: 5'- --aCCUgacgaCGCCGCUGCUGCgGCgGCu -3' miRNA: 3'- aaaGGAag---GCGGUGGUGAUGgUGgUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 128935 | 0.66 | 0.919813 |
Target: 5'- gUUCCUggggcugcuggCCGgCGCCuGCgACCGCCGCc -3' miRNA: 3'- aAAGGAa----------GGCgGUGG-UGaUGGUGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 72336 | 0.66 | 0.919813 |
Target: 5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3' miRNA: 3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 72306 | 0.66 | 0.919813 |
Target: 5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3' miRNA: 3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 72276 | 0.66 | 0.919813 |
Target: 5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3' miRNA: 3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5' |
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5328 | 3' | -55.3 | NC_001798.1 | + | 38449 | 0.66 | 0.919813 |
Target: 5'- --cCCUggaCCGCCACCgagACUGCCGgauugaCGCg -3' miRNA: 3'- aaaGGAa--GGCGGUGG---UGAUGGUg-----GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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