miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 3' -55.3 NC_001798.1 + 1389 0.68 0.798598
Target:  5'- -gUCCgaugaCCGCCuCgGCcGCCGCCACg -3'
miRNA:   3'- aaAGGaa---GGCGGuGgUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 1493 0.68 0.833887
Target:  5'- ------cCCGCgCGCCGCcGCCGCCGCc -3'
miRNA:   3'- aaaggaaGGCG-GUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 3868 0.7 0.700764
Target:  5'- gUUCCgcgggUCGCCcCCGC-ACCGCCGCc -3'
miRNA:   3'- aAAGGaa---GGCGGuGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 3934 0.67 0.880962
Target:  5'- -------gCGCCGCCGCUGCUGCUGCu -3'
miRNA:   3'- aaaggaagGCGGUGGUGAUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 4086 0.71 0.667722
Target:  5'- -gUCCUgcccUCCGCCGCCGCggcgucuucgcCCACCcGCg -3'
miRNA:   3'- aaAGGA----AGGCGGUGGUGau---------GGUGG-UG- -5'
5328 3' -55.3 NC_001798.1 + 7321 0.66 0.907834
Target:  5'- --cCCcgCCGCCGCCGCccuUugC-CCGCg -3'
miRNA:   3'- aaaGGaaGGCGGUGGUG---AugGuGGUG- -5'
5328 3' -55.3 NC_001798.1 + 8758 0.71 0.669799
Target:  5'- -cUCCggcagCaCGCCgACCACcGCCGCCACc -3'
miRNA:   3'- aaAGGaa---G-GCGG-UGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 8853 0.72 0.58646
Target:  5'- --cCCgaCCGCCGCCGCgccCCACCGg -3'
miRNA:   3'- aaaGGaaGGCGGUGGUGau-GGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 9010 0.67 0.858381
Target:  5'- --cCCgcgccCCGCCGCCACacCCACgGCa -3'
miRNA:   3'- aaaGGaa---GGCGGUGGUGauGGUGgUG- -5'
5328 3' -55.3 NC_001798.1 + 9148 0.73 0.53219
Target:  5'- cUUCCUUCC-CCGCCGCgaccccgaccccgccCCACCGCc -3'
miRNA:   3'- aAAGGAAGGcGGUGGUGau-------------GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 9243 0.7 0.69049
Target:  5'- --cCCggCCGCCGCgCGCccccgcccgGCCGCCGCg -3'
miRNA:   3'- aaaGGaaGGCGGUG-GUGa--------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 9285 0.7 0.69049
Target:  5'- --cCCggCCGCCGCgCGCccccgcccgGCCGCCGCg -3'
miRNA:   3'- aaaGGaaGGCGGUG-GUGa--------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 9327 0.7 0.69049
Target:  5'- --cCCggCCGCCGCgCGCccccgcccgGCCGCCGCg -3'
miRNA:   3'- aaaGGaaGGCGGUG-GUGa--------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 15700 0.7 0.731188
Target:  5'- --aCCagCCGCUgcggcuggagGCCGCggGCCACCACg -3'
miRNA:   3'- aaaGGaaGGCGG----------UGGUGa-UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 16799 0.73 0.545358
Target:  5'- --cCCggUCCGCCGCgCGCUGCUcCCGCu -3'
miRNA:   3'- aaaGGa-AGGCGGUG-GUGAUGGuGGUG- -5'
5328 3' -55.3 NC_001798.1 + 17493 0.66 0.907834
Target:  5'- -aUCCccUCCGCCACCucgACCagACUGCg -3'
miRNA:   3'- aaAGGa-AGGCGGUGGugaUGG--UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 18425 0.75 0.456959
Target:  5'- -gUCUUUCCaCCACCAgcACCACCACc -3'
miRNA:   3'- aaAGGAAGGcGGUGGUgaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 19837 0.7 0.710979
Target:  5'- --aCCgugCCgGCCGCCGCcGCCGCCGa -3'
miRNA:   3'- aaaGGaa-GG-CGGUGGUGaUGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 20224 0.67 0.849612
Target:  5'- -gUCC-UCCGCC-UCGCUcgccgucACCAUCACg -3'
miRNA:   3'- aaAGGaAGGCGGuGGUGA-------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 24302 0.67 0.858381
Target:  5'- -cUCCcgUCUgggcccccgGCCACUGCUGcuCCACCACg -3'
miRNA:   3'- aaAGGa-AGG---------CGGUGGUGAU--GGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.