miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 3' -55.3 NC_001798.1 + 153567 0.7 0.721123
Target:  5'- --aCCUcCaCGCCGCCGC--CCGCCGCg -3'
miRNA:   3'- aaaGGAaG-GCGGUGGUGauGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 153412 0.66 0.911531
Target:  5'- -cUCCcgCCGCgGcCCGCgcagcuccgccggGCCGCCGCg -3'
miRNA:   3'- aaAGGaaGGCGgU-GGUGa------------UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 151879 0.66 0.919813
Target:  5'- --gCCUcgCUGCCGCCG--GCCACgCGCa -3'
miRNA:   3'- aaaGGAa-GGCGGUGGUgaUGGUG-GUG- -5'
5328 3' -55.3 NC_001798.1 + 151600 0.78 0.314007
Target:  5'- --gCCggCCGCCGCCACcACCGCCGg -3'
miRNA:   3'- aaaGGaaGGCGGUGGUGaUGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 149797 0.74 0.475982
Target:  5'- -gUCCUcgUCCGCCAUCGCgaccucgGCC-CCGCg -3'
miRNA:   3'- aaAGGA--AGGCGGUGGUGa------UGGuGGUG- -5'
5328 3' -55.3 NC_001798.1 + 149339 0.7 0.700764
Target:  5'- --gUCgcgCCGCCGCCGCU-CCGCCcGCg -3'
miRNA:   3'- aaaGGaa-GGCGGUGGUGAuGGUGG-UG- -5'
5328 3' -55.3 NC_001798.1 + 145263 0.68 0.833887
Target:  5'- -cUCCagUCCGCguacaGCuCGCUGuCCGCCACg -3'
miRNA:   3'- aaAGGa-AGGCGg----UG-GUGAU-GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 133061 0.73 0.515149
Target:  5'- --cCCUUCgcgaUGCCGCCGCUGCCgucccggucuccGCCGCg -3'
miRNA:   3'- aaaGGAAG----GCGGUGGUGAUGG------------UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 131437 0.71 0.680165
Target:  5'- --cCCcgCCGaCACCACcACCACCACc -3'
miRNA:   3'- aaaGGaaGGCgGUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 130529 0.71 0.659401
Target:  5'- --gCCaUgaGCCGCCGCUACgACCGCg -3'
miRNA:   3'- aaaGGaAggCGGUGGUGAUGgUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 130361 0.68 0.798598
Target:  5'- ------cCCGCCGCCGCcGCCGCCcCg -3'
miRNA:   3'- aaaggaaGGCGGUGGUGaUGGUGGuG- -5'
5328 3' -55.3 NC_001798.1 + 129817 0.79 0.246452
Target:  5'- --gCCUgcugagcUCCGCCGCCGC-GCCGCCGCg -3'
miRNA:   3'- aaaGGA-------AGGCGGUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 129559 0.81 0.192373
Target:  5'- --gCCgacgCCGCCGCCGCgGCCGCCGCg -3'
miRNA:   3'- aaaGGaa--GGCGGUGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 128935 0.66 0.919813
Target:  5'- gUUCCUggggcugcuggCCGgCGCCuGCgACCGCCGCc -3'
miRNA:   3'- aAAGGAa----------GGCgGUGG-UGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 128680 0.67 0.858381
Target:  5'- --cCCgaCgCGCCGCCGCUgcGCCucuGCCGCg -3'
miRNA:   3'- aaaGGaaG-GCGGUGGUGA--UGG---UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 127121 0.71 0.648981
Target:  5'- --cCCUgCCGCCcgcCCGCcGCCGCCGCc -3'
miRNA:   3'- aaaGGAaGGCGGu--GGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 126851 0.67 0.873658
Target:  5'- --cCCagCCGcCCGCCAUgucCCGCCGCc -3'
miRNA:   3'- aaaGGaaGGC-GGUGGUGau-GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 126515 0.73 0.555558
Target:  5'- --gCCUgCCGCCGCCugccccccGCcGCCGCCGCg -3'
miRNA:   3'- aaaGGAaGGCGGUGG--------UGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 126459 0.75 0.429213
Target:  5'- --cCCUUCCGCCccaccuggcgcuACgGCUGCgCACCACg -3'
miRNA:   3'- aaaGGAAGGCGG------------UGgUGAUG-GUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 125938 0.72 0.576115
Target:  5'- -gUCC-UCCGCCGCCGCggGCCcggGCCGu -3'
miRNA:   3'- aaAGGaAGGCGGUGGUGa-UGG---UGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.