miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5328 3' -55.3 NC_001798.1 + 123276 0.68 0.833887
Target:  5'- -cUCCgcgCCGCC-CCGCggGCCccggGCCGCu -3'
miRNA:   3'- aaAGGaa-GGCGGuGGUGa-UGG----UGGUG- -5'
5328 3' -55.3 NC_001798.1 + 123136 0.77 0.344393
Target:  5'- -gUCCggagUCCGCC-CCGCgccGCCGCCGCc -3'
miRNA:   3'- aaAGGa---AGGCGGuGGUGa--UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 120769 1.06 0.004246
Target:  5'- gUUUCCUUCCGCCACCACUACCACCACc -3'
miRNA:   3'- -AAAGGAAGGCGGUGGUGAUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 119020 0.66 0.913947
Target:  5'- -cUCUcUCCGCCAuccucCCGCccgGCCGcCCACu -3'
miRNA:   3'- aaAGGaAGGCGGU-----GGUGa--UGGU-GGUG- -5'
5328 3' -55.3 NC_001798.1 + 118843 0.69 0.750058
Target:  5'- -aUCCUccguuuuUCCGCUuuCCACcccGCCGCCACc -3'
miRNA:   3'- aaAGGA-------AGGCGGu-GGUGa--UGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 118748 0.66 0.894875
Target:  5'- -aUCgUUCa-CCACCACgccccCCACCGCg -3'
miRNA:   3'- aaAGgAAGgcGGUGGUGau---GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 118525 0.69 0.741164
Target:  5'- --cCCgaCCGCCGCCGCgcccgcguuucUGCCGCCcGCg -3'
miRNA:   3'- aaaGGaaGGCGGUGGUG-----------AUGGUGG-UG- -5'
5328 3' -55.3 NC_001798.1 + 116249 0.66 0.913947
Target:  5'- --cCCggagucUCCGCC-CCAC--CCGCCGCg -3'
miRNA:   3'- aaaGGa-----AGGCGGuGGUGauGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 111660 0.68 0.833887
Target:  5'- -cUCgggcgCCGCCGCCGCguccGCgACCACg -3'
miRNA:   3'- aaAGgaa--GGCGGUGGUGa---UGgUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 106380 0.69 0.751041
Target:  5'- --cCCggggCCGCC-CCGCggggcgUGCCGCCGCg -3'
miRNA:   3'- aaaGGaa--GGCGGuGGUG------AUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 105729 0.66 0.907834
Target:  5'- --cCCagCCGCCccuCCGCUguacGCCACCGg -3'
miRNA:   3'- aaaGGaaGGCGGu--GGUGA----UGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 102819 0.68 0.825331
Target:  5'- --cCCgugggggCCGCCGCCG-UGCCGCUGCu -3'
miRNA:   3'- aaaGGaa-----GGCGGUGGUgAUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 100120 0.67 0.85042
Target:  5'- --gCCUcCCGCC-CCGCaACC-CCGCg -3'
miRNA:   3'- aaaGGAaGGCGGuGGUGaUGGuGGUG- -5'
5328 3' -55.3 NC_001798.1 + 99912 0.72 0.596839
Target:  5'- --cCCcgCCGCCgacACCACcGCCGCCGCc -3'
miRNA:   3'- aaaGGaaGGCGG---UGGUGaUGGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 96713 0.68 0.833887
Target:  5'- --gCCaUCCGCgGCCGC-ACCAgCACc -3'
miRNA:   3'- aaaGGaAGGCGgUGGUGaUGGUgGUG- -5'
5328 3' -55.3 NC_001798.1 + 96426 0.67 0.842253
Target:  5'- -cUCCgucaggcCCGCCGCCGCgugGCCcCCGa -3'
miRNA:   3'- aaAGGaa-----GGCGGUGGUGa--UGGuGGUg -5'
5328 3' -55.3 NC_001798.1 + 96080 0.75 0.447602
Target:  5'- -gUCCcgaggcCCGCCACCACcGCCGCCGu -3'
miRNA:   3'- aaAGGaa----GGCGGUGGUGaUGGUGGUg -5'
5328 3' -55.3 NC_001798.1 + 95129 0.68 0.833887
Target:  5'- --gCCgUCC-CCACCACccuCCGCCGCc -3'
miRNA:   3'- aaaGGaAGGcGGUGGUGau-GGUGGUG- -5'
5328 3' -55.3 NC_001798.1 + 92582 0.73 0.545358
Target:  5'- gUUCCUggcgcuguucgUCCGCUGCCACacagACCugCACc -3'
miRNA:   3'- aAAGGA-----------AGGCGGUGGUGa---UGGugGUG- -5'
5328 3' -55.3 NC_001798.1 + 91701 0.67 0.880962
Target:  5'- gUUCCUUCCcuuuCC-CCA--GCCGCCACc -3'
miRNA:   3'- aAAGGAAGGc---GGuGGUgaUGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.