miRNA display CGI


Results 41 - 60 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5333 5' -58.4 NC_001798.1 + 27860 0.66 0.823888
Target:  5'- cGCCCc-GACGCGcUCcGGCuCCGGgCCu -3'
miRNA:   3'- -CGGGucUUGCGCuAGuCCG-GGCUgGG- -5'
5333 5' -58.4 NC_001798.1 + 134178 0.66 0.823888
Target:  5'- cGCCCGcgcCGCGA-CGGcCCCGGCCg -3'
miRNA:   3'- -CGGGUcuuGCGCUaGUCcGGGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 91959 0.66 0.82306
Target:  5'- cCCCGGGcccccccguccgGCGCGAUCcgguggcGGGCCauucucGCCCa -3'
miRNA:   3'- cGGGUCU------------UGCGCUAG-------UCCGGgc----UGGG- -5'
5333 5' -58.4 NC_001798.1 + 9506 0.66 0.82306
Target:  5'- uGUCCGccACGCGAauguaagUgGGGCCCGucgccgagGCCCg -3'
miRNA:   3'- -CGGGUcuUGCGCU-------AgUCCGGGC--------UGGG- -5'
5333 5' -58.4 NC_001798.1 + 62443 0.66 0.818895
Target:  5'- cCCCGGAcgucgccggugggccGCGCGA-CGGcGCCCGGucgUCCu -3'
miRNA:   3'- cGGGUCU---------------UGCGCUaGUC-CGGGCU---GGG- -5'
5333 5' -58.4 NC_001798.1 + 28596 0.66 0.815535
Target:  5'- gGCCUGGGAgacggcCGCGcgCcuGGCCCGACg- -3'
miRNA:   3'- -CGGGUCUU------GCGCuaGu-CCGGGCUGgg -5'
5333 5' -58.4 NC_001798.1 + 43669 0.66 0.815535
Target:  5'- gGCCgCGGGGCuGgGGUCGuggguGGUCaCGGCCCg -3'
miRNA:   3'- -CGG-GUCUUG-CgCUAGU-----CCGG-GCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 144773 0.66 0.815535
Target:  5'- uGCCCAacgcauCGCGuAUCucuuuauaaaGGGCCCGGCgCg -3'
miRNA:   3'- -CGGGUcuu---GCGC-UAG----------UCCGGGCUGgG- -5'
5333 5' -58.4 NC_001798.1 + 2501 0.66 0.815535
Target:  5'- cGCCgCGGGGCGCGG-C-GGCCgCGGCg- -3'
miRNA:   3'- -CGG-GUCUUGCGCUaGuCCGG-GCUGgg -5'
5333 5' -58.4 NC_001798.1 + 23507 0.66 0.815535
Target:  5'- cGCCgCAGAccACGCcg-CGGGCggGACCCu -3'
miRNA:   3'- -CGG-GUCU--UGCGcuaGUCCGggCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 74769 0.66 0.815535
Target:  5'- cCCCGGAcgcCGCGGccUCGGGUCC-ACCg -3'
miRNA:   3'- cGGGUCUu--GCGCU--AGUCCGGGcUGGg -5'
5333 5' -58.4 NC_001798.1 + 91636 0.66 0.815535
Target:  5'- cGCCCGGGugaGCGUGAcgUCaaaggGGGCgUGGCCg -3'
miRNA:   3'- -CGGGUCU---UGCGCU--AG-----UCCGgGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 102171 0.66 0.815535
Target:  5'- cGCCguGAugGUuucGUgGGGCCCGgaaGCCUg -3'
miRNA:   3'- -CGGguCUugCGc--UAgUCCGGGC---UGGG- -5'
5333 5' -58.4 NC_001798.1 + 117755 0.66 0.815535
Target:  5'- aCCCGGcGCGCccuUCGcGGCCaCGGCCa -3'
miRNA:   3'- cGGGUCuUGCGcu-AGU-CCGG-GCUGGg -5'
5333 5' -58.4 NC_001798.1 + 122059 0.66 0.812997
Target:  5'- aGCCCuGGGCGCGucggacgcggaggcGgugcuggCGGGCCUGgagccGCCCg -3'
miRNA:   3'- -CGGGuCUUGCGC--------------Ua------GUCCGGGC-----UGGG- -5'
5333 5' -58.4 NC_001798.1 + 72993 0.67 0.807024
Target:  5'- gGCCCacgcgaccgAGGACGCGcccccCA-GCCCGGCCg -3'
miRNA:   3'- -CGGG---------UCUUGCGCua---GUcCGGGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 128255 0.67 0.807024
Target:  5'- cGgCCGGcAugGUGGaccgCGGGCUCGGCCg -3'
miRNA:   3'- -CgGGUC-UugCGCUa---GUCCGGGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 14791 0.67 0.807024
Target:  5'- cGCUCGGGuGCGCGuAUCGccuGcGCCCcGCCCg -3'
miRNA:   3'- -CGGGUCU-UGCGC-UAGU---C-CGGGcUGGG- -5'
5333 5' -58.4 NC_001798.1 + 70095 0.67 0.807024
Target:  5'- cGCCauguCGGAcaGCGCGcucCAGGuCCCGgcGCCCg -3'
miRNA:   3'- -CGG----GUCU--UGCGCua-GUCC-GGGC--UGGG- -5'
5333 5' -58.4 NC_001798.1 + 28263 0.67 0.807024
Target:  5'- cGCaaGGAGCGCGGgccgCAGcGCCCccuuccGCCCc -3'
miRNA:   3'- -CGggUCUUGCGCUa---GUC-CGGGc-----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.