miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5333 5' -58.4 NC_001798.1 + 144407 0.66 0.840093
Target:  5'- aGCCUcuAGGGCGaCGAcgCuGGacagCCGACCCg -3'
miRNA:   3'- -CGGG--UCUUGC-GCUa-GuCCg---GGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 23887 0.66 0.840093
Target:  5'- cGCCCGaGGCG-GAggAGGCgCgGGCCCg -3'
miRNA:   3'- -CGGGUcUUGCgCUagUCCG-GgCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 45799 0.66 0.840093
Target:  5'- -aCCGGGGCcCcAUCuGGCCCGACgCg -3'
miRNA:   3'- cgGGUCUUGcGcUAGuCCGGGCUGgG- -5'
5333 5' -58.4 NC_001798.1 + 82065 0.66 0.840093
Target:  5'- cCCCGGGGCcccGCGG-CcGGCCC-ACCCc -3'
miRNA:   3'- cGGGUCUUG---CGCUaGuCCGGGcUGGG- -5'
5333 5' -58.4 NC_001798.1 + 123387 0.66 0.840093
Target:  5'- cCCCAGGcgACGC---CAGGCCCcccgggagccgcGGCCCc -3'
miRNA:   3'- cGGGUCU--UGCGcuaGUCCGGG------------CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 128430 0.66 0.840093
Target:  5'- cGCCUccacgcugcgguGGGGCGCGca-GGGUCCGugCUu -3'
miRNA:   3'- -CGGG------------UCUUGCGCuagUCCGGGCugGG- -5'
5333 5' -58.4 NC_001798.1 + 32533 0.66 0.835304
Target:  5'- gGUCCucguggaccagacggGGAACGUGGcggaccugcugCGGGCCgCGGCCCc -3'
miRNA:   3'- -CGGG---------------UCUUGCGCUa----------GUCCGG-GCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 10812 0.66 0.832077
Target:  5'- uUCCAGGACGUucugGGUgcugccgcCAGGCacgauaCGACCCa -3'
miRNA:   3'- cGGGUCUUGCG----CUA--------GUCCGg-----GCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 47810 0.66 0.832077
Target:  5'- cGUCCGu--CGCGGgcucUCAcGGCCCcGGCCCc -3'
miRNA:   3'- -CGGGUcuuGCGCU----AGU-CCGGG-CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 86832 0.66 0.832077
Target:  5'- cGCuCCGGcuCcCGGccCGGGCCCGGCCg -3'
miRNA:   3'- -CG-GGUCuuGcGCUa-GUCCGGGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 109371 0.66 0.832077
Target:  5'- cGCCCGGGGagcaGCGGgcugCGcGGC-CGACUCg -3'
miRNA:   3'- -CGGGUCUUg---CGCUa---GU-CCGgGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 135492 0.66 0.832077
Target:  5'- cCCgGGGACGCGGacgccgcgCAcGGCgCGAUCCa -3'
miRNA:   3'- cGGgUCUUGCGCUa-------GU-CCGgGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 141037 0.66 0.832077
Target:  5'- cGCCCcggccuGGACGCGAcCcagAGGaCCCuGGCCUa -3'
miRNA:   3'- -CGGGu-----CUUGCGCUaG---UCC-GGG-CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 72055 0.66 0.832077
Target:  5'- gGCCUGGGcGCGCGAcuUC-GGCCUGGgCUa -3'
miRNA:   3'- -CGGGUCU-UGCGCU--AGuCCGGGCUgGG- -5'
5333 5' -58.4 NC_001798.1 + 113516 0.66 0.827184
Target:  5'- cGCCCuGGugGCGGccgcccaugagacguUCAGuCCCGACg- -3'
miRNA:   3'- -CGGGuCUugCGCU---------------AGUCcGGGCUGgg -5'
5333 5' -58.4 NC_001798.1 + 93936 0.66 0.823888
Target:  5'- gGCCaccGAGCGCG-UCAuGGCCgagcucgaGGCCCu -3'
miRNA:   3'- -CGGgu-CUUGCGCuAGU-CCGGg-------CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 117084 0.66 0.823888
Target:  5'- cGCCCgcgAGAGCGCGG-CGGgggagaacGCgCUGACCUa -3'
miRNA:   3'- -CGGG---UCUUGCGCUaGUC--------CG-GGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 154270 0.66 0.823888
Target:  5'- uCCCGGcuGGCGUGcgCA-GCCCGGgCCg -3'
miRNA:   3'- cGGGUC--UUGCGCuaGUcCGGGCUgGG- -5'
5333 5' -58.4 NC_001798.1 + 27860 0.66 0.823888
Target:  5'- cGCCCc-GACGCGcUCcGGCuCCGGgCCu -3'
miRNA:   3'- -CGGGucUUGCGCuAGuCCG-GGCUgGG- -5'
5333 5' -58.4 NC_001798.1 + 57187 0.66 0.823888
Target:  5'- cGCCCAGAucACGUG--CGGGUCCGuuCg -3'
miRNA:   3'- -CGGGUCU--UGCGCuaGUCCGGGCugGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.