miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5333 5' -58.4 NC_001798.1 + 147296 0.75 0.339088
Target:  5'- uCCCGGGcCGCcccgcuccCGGGCCCGACCCu -3'
miRNA:   3'- cGGGUCUuGCGcua-----GUCCGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 108456 0.75 0.339088
Target:  5'- gGCCuCGGAACGCGAgCcuGCCCGAgcucCCCg -3'
miRNA:   3'- -CGG-GUCUUGCGCUaGucCGGGCU----GGG- -5'
5333 5' -58.4 NC_001798.1 + 71626 0.75 0.346549
Target:  5'- -gCCAGAcgcugGCGCGcAUCauGGGCCCGGCCg -3'
miRNA:   3'- cgGGUCU-----UGCGC-UAG--UCCGGGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 2009 0.75 0.354128
Target:  5'- cGCCCAGGcggcCGUGG-CGGGCCCGcagagccgguuGCCCa -3'
miRNA:   3'- -CGGGUCUu---GCGCUaGUCCGGGC-----------UGGG- -5'
5333 5' -58.4 NC_001798.1 + 147221 0.75 0.354128
Target:  5'- gGCCCccggcGGAGCGCGG--GGGCCCcggGGCCCc -3'
miRNA:   3'- -CGGG-----UCUUGCGCUagUCCGGG---CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 59466 0.75 0.354128
Target:  5'- uGCCCGG-GCGCGGUgAGGCguUCGGCCa -3'
miRNA:   3'- -CGGGUCuUGCGCUAgUCCG--GGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 66359 0.75 0.361822
Target:  5'- cCCCAGGAUGCGAUaCAGGCgggCgGACCg -3'
miRNA:   3'- cGGGUCUUGCGCUA-GUCCG---GgCUGGg -5'
5333 5' -58.4 NC_001798.1 + 4092 0.75 0.369633
Target:  5'- gGUCCGGGcCGgGG-CGGGCUCGGCCCu -3'
miRNA:   3'- -CGGGUCUuGCgCUaGUCCGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 61839 0.75 0.369633
Target:  5'- cGCCCcgggggaccggGGAACGCGGgccgCcGGCCCaGCCCg -3'
miRNA:   3'- -CGGG-----------UCUUGCGCUa---GuCCGGGcUGGG- -5'
5333 5' -58.4 NC_001798.1 + 93873 0.75 0.377557
Target:  5'- gGCCCuGAagcGCGCGGaCGGGUCCGAgaacaCCCg -3'
miRNA:   3'- -CGGGuCU---UGCGCUaGUCCGGGCU-----GGG- -5'
5333 5' -58.4 NC_001798.1 + 60506 0.75 0.377557
Target:  5'- uGCaCCAGcgUGCGAaacgGGGCCUGGCCCg -3'
miRNA:   3'- -CG-GGUCuuGCGCUag--UCCGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 153308 0.74 0.393746
Target:  5'- gGCCCGGGcuCGgGcUCGGGCCCGAgCUCg -3'
miRNA:   3'- -CGGGUCUu-GCgCuAGUCCGGGCU-GGG- -5'
5333 5' -58.4 NC_001798.1 + 152409 0.74 0.402008
Target:  5'- -gCCGGggUGCGAaugcGGCCCGACCg -3'
miRNA:   3'- cgGGUCuuGCGCUagu-CCGGGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 59856 0.74 0.418004
Target:  5'- gGCUCGGAGgaggaguccuggcUGUGGUCGGGCC-GGCCCg -3'
miRNA:   3'- -CGGGUCUU-------------GCGCUAGUCCGGgCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 23602 0.73 0.427441
Target:  5'- cGCCCAGGGC-CGAgcccgCcccGGCCCgGACCCc -3'
miRNA:   3'- -CGGGUCUUGcGCUa----Gu--CCGGG-CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 77425 0.73 0.436128
Target:  5'- aGUCCAG-GCGCGc-CGGGCCUGcGCCCa -3'
miRNA:   3'- -CGGGUCuUGCGCuaGUCCGGGC-UGGG- -5'
5333 5' -58.4 NC_001798.1 + 58858 0.73 0.436128
Target:  5'- gGCCCcGAGCGCcaggcacugGGUCccGGGCCCGgaACCCc -3'
miRNA:   3'- -CGGGuCUUGCG---------CUAG--UCCGGGC--UGGG- -5'
5333 5' -58.4 NC_001798.1 + 25518 0.73 0.436128
Target:  5'- gGCCUGG-AUGCGccaGGuGCCCGACCCg -3'
miRNA:   3'- -CGGGUCuUGCGCuagUC-CGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 150254 0.73 0.44315
Target:  5'- cGCCCGGcccucccgacccGCGCGcGUCGGucgcgccuGCCCGGCCCa -3'
miRNA:   3'- -CGGGUCu-----------UGCGC-UAGUC--------CGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 153388 0.73 0.444033
Target:  5'- gGCgCCGGAAccgguCGCGGUC-GGCCCGcucgcgcGCCCa -3'
miRNA:   3'- -CG-GGUCUU-----GCGCUAGuCCGGGC-------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.