miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5333 5' -58.4 NC_001798.1 + 12678 0.71 0.537661
Target:  5'- cGgCCAGcGCGCcgauGAUCAGGCCCGGgUUg -3'
miRNA:   3'- -CgGGUCuUGCG----CUAGUCCGGGCUgGG- -5'
5333 5' -58.4 NC_001798.1 + 14791 0.67 0.807024
Target:  5'- cGCUCGGGuGCGCGuAUCGccuGcGCCCcGCCCg -3'
miRNA:   3'- -CGGGUCU-UGCGC-UAGU---C-CGGGcUGGG- -5'
5333 5' -58.4 NC_001798.1 + 15376 0.7 0.606338
Target:  5'- gGCCguGGGCGCGGcggaGGcGCCCaccgGACCCg -3'
miRNA:   3'- -CGGguCUUGCGCUag--UC-CGGG----CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 15833 0.69 0.695537
Target:  5'- cGCCCGGuuCGgGGggcccgaacgUCGGGgUCGACCCc -3'
miRNA:   3'- -CGGGUCuuGCgCU----------AGUCCgGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 16224 0.71 0.547337
Target:  5'- cGCCUgugGGGGgGCGGUgGGGCCgGgGCCCu -3'
miRNA:   3'- -CGGG---UCUUgCGCUAgUCCGGgC-UGGG- -5'
5333 5' -58.4 NC_001798.1 + 16369 0.67 0.780624
Target:  5'- -aCgAGAGCGUaccgGGUCggAGGCCCGccGCCCu -3'
miRNA:   3'- cgGgUCUUGCG----CUAG--UCCGGGC--UGGG- -5'
5333 5' -58.4 NC_001798.1 + 16607 0.66 0.851015
Target:  5'- gGCCCAGGggcucgugacggacgACGCGccggggCAGGUCUugccGCCCg -3'
miRNA:   3'- -CGGGUCU---------------UGCGCua----GUCCGGGc---UGGG- -5'
5333 5' -58.4 NC_001798.1 + 17122 0.7 0.646114
Target:  5'- cGCCCGcGAgcgguaguGCGCGGUgAGGCgCGAUUCc -3'
miRNA:   3'- -CGGGU-CU--------UGCGCUAgUCCGgGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 19981 0.68 0.734219
Target:  5'- aGCCCcgccGGACGCGGauucCGGGuucuCCCGGCCg -3'
miRNA:   3'- -CGGGu---CUUGCGCUa---GUCC----GGGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 21042 0.72 0.49027
Target:  5'- cGCCCGGccugcgagaaAGCGCGGauguugggaUCGGGgccccgucccCCCGGCCCg -3'
miRNA:   3'- -CGGGUC----------UUGCGCU---------AGUCC----------GGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 21766 0.69 0.656051
Target:  5'- gGCCCuuuauGuGCGCGAggaacGGCCCGcCCCc -3'
miRNA:   3'- -CGGGu----CuUGCGCUagu--CCGGGCuGGG- -5'
5333 5' -58.4 NC_001798.1 + 21946 0.7 0.64512
Target:  5'- cGCCCccuuugggcGGAGCGCGGgaugacgCGGGCCCcgggcagGGCgCCa -3'
miRNA:   3'- -CGGG---------UCUUGCGCUa------GUCCGGG-------CUG-GG- -5'
5333 5' -58.4 NC_001798.1 + 23086 0.71 0.556092
Target:  5'- cCCCGGAGCGCGAcggCGcgcaagaagaagcGGCCCG-CUCg -3'
miRNA:   3'- cGGGUCUUGCGCUa--GU-------------CCGGGCuGGG- -5'
5333 5' -58.4 NC_001798.1 + 23507 0.66 0.815535
Target:  5'- cGCCgCAGAccACGCcg-CGGGCggGACCCu -3'
miRNA:   3'- -CGG-GUCU--UGCGcuaGUCCGggCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 23602 0.73 0.427441
Target:  5'- cGCCCAGGGC-CGAgcccgCcccGGCCCgGACCCc -3'
miRNA:   3'- -CGGGUCUUGcGCUa----Gu--CCGGG-CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 23652 0.72 0.528045
Target:  5'- cGCCUGGAGCGCcgcCGGGCCCG-CgCg -3'
miRNA:   3'- -CGGGUCUUGCGcuaGUCCGGGCuGgG- -5'
5333 5' -58.4 NC_001798.1 + 23830 0.69 0.709194
Target:  5'- cCCCGGGGCGCGugcuguacggCGGGCugggcgacagccgccCCGGCCUc -3'
miRNA:   3'- cGGGUCUUGCGCua--------GUCCG---------------GGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 23887 0.66 0.840093
Target:  5'- cGCCCGaGGCG-GAggAGGCgCgGGCCCg -3'
miRNA:   3'- -CGGGUcUUGCgCUagUCCG-GgCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 24051 0.67 0.78956
Target:  5'- cGCCCGGGgacgugGCGCugGAcCAGGCCUGcuUCCg -3'
miRNA:   3'- -CGGGUCU------UGCG--CUaGUCCGGGCu-GGG- -5'
5333 5' -58.4 NC_001798.1 + 24571 0.66 0.847932
Target:  5'- cGgCCGGcGCGCGGaggCGGGCCgcgUGGCCg -3'
miRNA:   3'- -CgGGUCuUGCGCUa--GUCCGG---GCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.