miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5333 5' -58.4 NC_001798.1 + 646 0.71 0.583569
Target:  5'- cCCCAGAcccccCGCGGgcgCGGgagacgugccgcccGCCCGACCCc -3'
miRNA:   3'- cGGGUCUu----GCGCUa--GUC--------------CGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 1236 0.71 0.57667
Target:  5'- cGCCCAGcguaucuGCGgGggCGGGCCCGcguCCg -3'
miRNA:   3'- -CGGGUCu------UGCgCuaGUCCGGGCu--GGg -5'
5333 5' -58.4 NC_001798.1 + 1282 0.69 0.675861
Target:  5'- aGCaCCAGcgggGGCGCGucgccGUCGGGCUCGagcagcGCCCg -3'
miRNA:   3'- -CG-GGUC----UUGCGC-----UAGUCCGGGC------UGGG- -5'
5333 5' -58.4 NC_001798.1 + 1418 0.72 0.49027
Target:  5'- cGCCCAGGccccaGCGCGcgCAGGCgCgGugCg -3'
miRNA:   3'- -CGGGUCU-----UGCGCuaGUCCG-GgCugGg -5'
5333 5' -58.4 NC_001798.1 + 1505 0.67 0.780624
Target:  5'- cGCCC-GAG-GCGG-C-GGCCCGGCCg -3'
miRNA:   3'- -CGGGuCUUgCGCUaGuCCGGGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 2009 0.75 0.354128
Target:  5'- cGCCCAGGcggcCGUGG-CGGGCCCGcagagccgguuGCCCa -3'
miRNA:   3'- -CGGGUCUu---GCGCUaGUCCGGGC-----------UGGG- -5'
5333 5' -58.4 NC_001798.1 + 2199 0.67 0.798363
Target:  5'- aUCCAGGccgccGCGCGGcgcagCGGGCCCGAg-- -3'
miRNA:   3'- cGGGUCU-----UGCGCUa----GUCCGGGCUggg -5'
5333 5' -58.4 NC_001798.1 + 2411 0.71 0.58653
Target:  5'- gGCCgAGGGCGCcggcGUguGGCUgGGCCCc -3'
miRNA:   3'- -CGGgUCUUGCGc---UAguCCGGgCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 2501 0.66 0.815535
Target:  5'- cGCCgCGGGGCGCGG-C-GGCCgCGGCg- -3'
miRNA:   3'- -CGG-GUCUUGCGCUaGuCCGG-GCUGgg -5'
5333 5' -58.4 NC_001798.1 + 2785 0.72 0.50901
Target:  5'- aGCUCAGcaGGCGCGGgcuccgcggCAGcGCCgGGCCCa -3'
miRNA:   3'- -CGGGUC--UUGCGCUa--------GUC-CGGgCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 3002 0.76 0.331743
Target:  5'- gGCCCcGGGCGCGGgggcgcggCGGGCCgGGCuCCg -3'
miRNA:   3'- -CGGGuCUUGCGCUa-------GUCCGGgCUG-GG- -5'
5333 5' -58.4 NC_001798.1 + 3198 0.67 0.78956
Target:  5'- cCCCGGccGGCGCGGaggCGGGCgCGGCgCu -3'
miRNA:   3'- cGGGUC--UUGCGCUa--GUCCGgGCUGgG- -5'
5333 5' -58.4 NC_001798.1 + 3785 0.67 0.771561
Target:  5'- gGCgCCGGGGCGCccGAggccucgaacCGGGCCCGcGCCUc -3'
miRNA:   3'- -CG-GGUCUUGCG--CUa---------GUCCGGGC-UGGG- -5'
5333 5' -58.4 NC_001798.1 + 3887 0.71 0.58653
Target:  5'- cGCCCcGGGgGCGG--GGGgCCGGCCCc -3'
miRNA:   3'- -CGGGuCUUgCGCUagUCCgGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 4092 0.75 0.369633
Target:  5'- gGUCCGGGcCGgGG-CGGGCUCGGCCCu -3'
miRNA:   3'- -CGGGUCUuGCgCUaGUCCGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 5875 0.72 0.518493
Target:  5'- uGCCCGGGGCccGCGucaucccgCGGGCuCCGcCCCg -3'
miRNA:   3'- -CGGGUCUUG--CGCua------GUCCG-GGCuGGG- -5'
5333 5' -58.4 NC_001798.1 + 7495 0.66 0.855585
Target:  5'- aGCCCGGuccccuACGCcccccUCGGcaGCCCgGACCCc -3'
miRNA:   3'- -CGGGUCu-----UGCGcu---AGUC--CGGG-CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 9506 0.66 0.82306
Target:  5'- uGUCCGccACGCGAauguaagUgGGGCCCGucgccgagGCCCg -3'
miRNA:   3'- -CGGGUcuUGCGCU-------AgUCCGGGC--------UGGG- -5'
5333 5' -58.4 NC_001798.1 + 10812 0.66 0.832077
Target:  5'- uUCCAGGACGUucugGGUgcugccgcCAGGCacgauaCGACCCa -3'
miRNA:   3'- cGGGUCUUGCG----CUA--------GUCCGg-----GCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 12297 0.67 0.771561
Target:  5'- gGCCCAGGAuCGC---CAGGCCCugcagcgagcGGCCg -3'
miRNA:   3'- -CGGGUCUU-GCGcuaGUCCGGG----------CUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.