miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5333 5' -58.4 NC_001798.1 + 131342 0.8 0.180875
Target:  5'- cGCCCcGGGCGCGAcgUCGGcGCCCGGCgCg -3'
miRNA:   3'- -CGGGuCUUGCGCU--AGUC-CGGGCUGgG- -5'
5333 5' -58.4 NC_001798.1 + 59781 0.8 0.189909
Target:  5'- uCCgGGAACGCGGgcgguaccCGGGCCUGGCCCu -3'
miRNA:   3'- cGGgUCUUGCGCUa-------GUCCGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 147907 0.79 0.203712
Target:  5'- uCCCGGGggggcagGCGCGGgUCGGGCCCGuacGCCCa -3'
miRNA:   3'- cGGGUCU-------UGCGCU-AGUCCGGGC---UGGG- -5'
5333 5' -58.4 NC_001798.1 + 132549 0.79 0.208669
Target:  5'- gGUCCGGGGCGCGcUCGGaGCCCGucuuuacGCCCa -3'
miRNA:   3'- -CGGGUCUUGCGCuAGUC-CGGGC-------UGGG- -5'
5333 5' -58.4 NC_001798.1 + 28708 0.79 0.209171
Target:  5'- uGCCUGGAGCcCGAggcccgagcUCGGGCCCGAgCCCg -3'
miRNA:   3'- -CGGGUCUUGcGCU---------AGUCCGGGCU-GGG- -5'
5333 5' -58.4 NC_001798.1 + 32376 0.78 0.230094
Target:  5'- aGCCCGGGGCccGCGAccCGGcGCCCGGCCUc -3'
miRNA:   3'- -CGGGUCUUG--CGCUa-GUC-CGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 75824 0.78 0.246924
Target:  5'- aCCCGGAGcCGCuucuccaucgGAUCAGGCgCUGGCCCa -3'
miRNA:   3'- cGGGUCUU-GCG----------CUAGUCCG-GGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 92965 0.77 0.26415
Target:  5'- uGCCCGGAACGUGGaCGccguGGCCCGcgcggccGCCCa -3'
miRNA:   3'- -CGGGUCUUGCGCUaGU----CCGGGC-------UGGG- -5'
5333 5' -58.4 NC_001798.1 + 116189 0.77 0.270934
Target:  5'- gGCCCGGAGCuggGCGggCAGGCUCaGGCCg -3'
miRNA:   3'- -CGGGUCUUG---CGCuaGUCCGGG-CUGGg -5'
5333 5' -58.4 NC_001798.1 + 128950 0.77 0.279771
Target:  5'- cGCCCGG-GCGCGuucCGGGCCCGgaggaggcgcucgucACCCa -3'
miRNA:   3'- -CGGGUCuUGCGCua-GUCCGGGC---------------UGGG- -5'
5333 5' -58.4 NC_001798.1 + 127944 0.77 0.283628
Target:  5'- gGCCCcGGGCGaaa--AGGCCCGGCCCg -3'
miRNA:   3'- -CGGGuCUUGCgcuagUCCGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 144077 0.76 0.296788
Target:  5'- gGCCgGGAugGUGGUaCGGGUCCuGCCCg -3'
miRNA:   3'- -CGGgUCUugCGCUA-GUCCGGGcUGGG- -5'
5333 5' -58.4 NC_001798.1 + 151623 0.76 0.296788
Target:  5'- gGCCgGGGGCGUGGccgcguccaUCAGGCCCGcCUCg -3'
miRNA:   3'- -CGGgUCUUGCGCU---------AGUCCGGGCuGGG- -5'
5333 5' -58.4 NC_001798.1 + 35533 0.76 0.303543
Target:  5'- cGCCgCGGccGGCGCGGggcguugCcGGCCCGGCCCg -3'
miRNA:   3'- -CGG-GUC--UUGCGCUa------GuCCGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 30411 0.76 0.309724
Target:  5'- gGCCUgauGGACGCGGcCAcgcccccGGCCCGGCCCc -3'
miRNA:   3'- -CGGGu--CUUGCGCUaGU-------CCGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 34103 0.76 0.3238
Target:  5'- gGCgCguGGGgGCGGUgggcguaCGGGCCCGACCCg -3'
miRNA:   3'- -CG-GguCUUgCGCUA-------GUCCGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 52966 0.76 0.324517
Target:  5'- uGUCCGGGaggcGCGCGAcCGGGCUgggCGGCCCg -3'
miRNA:   3'- -CGGGUCU----UGCGCUaGUCCGG---GCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 3002 0.76 0.331743
Target:  5'- gGCCCcGGGCGCGGgggcgcggCGGGCCgGGCuCCg -3'
miRNA:   3'- -CGGGuCUUGCGCUa-------GUCCGGgCUG-GG- -5'
5333 5' -58.4 NC_001798.1 + 62258 0.75 0.338348
Target:  5'- cGCCCcGAGC-CGAUCccAGGCCCGccgggcgGCCCg -3'
miRNA:   3'- -CGGGuCUUGcGCUAG--UCCGGGC-------UGGG- -5'
5333 5' -58.4 NC_001798.1 + 108456 0.75 0.339088
Target:  5'- gGCCuCGGAACGCGAgCcuGCCCGAgcucCCCg -3'
miRNA:   3'- -CGG-GUCUUGCGCUaGucCGGGCU----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.