miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5333 5' -58.4 NC_001798.1 + 154270 0.66 0.823888
Target:  5'- uCCCGGcuGGCGUGcgCA-GCCCGGgCCg -3'
miRNA:   3'- cGGGUC--UUGCGCuaGUcCGGGCUgGG- -5'
5333 5' -58.4 NC_001798.1 + 154094 0.72 0.499601
Target:  5'- aGCgCCGGGGCGCGGcCGGcGCCgggGACCCc -3'
miRNA:   3'- -CG-GGUCUUGCGCUaGUC-CGGg--CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 153388 0.73 0.444033
Target:  5'- gGCgCCGGAAccgguCGCGGUC-GGCCCGcucgcgcGCCCa -3'
miRNA:   3'- -CG-GGUCUU-----GCGCUAGuCCGGGC-------UGGG- -5'
5333 5' -58.4 NC_001798.1 + 153308 0.74 0.393746
Target:  5'- gGCCCGGGcuCGgGcUCGGGCCCGAgCUCg -3'
miRNA:   3'- -CGGGUCUu-GCgCuAGUCCGGGCU-GGG- -5'
5333 5' -58.4 NC_001798.1 + 153065 0.69 0.665969
Target:  5'- cGCCCccuggggcgggcGGAGCgGCGGggCGGcGCCgGGCCCu -3'
miRNA:   3'- -CGGG------------UCUUG-CGCUa-GUC-CGGgCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 152709 0.69 0.705303
Target:  5'- aGCCCAGGggaccaauagggGC-CGAUCA-GCCC-ACCCa -3'
miRNA:   3'- -CGGGUCU------------UGcGCUAGUcCGGGcUGGG- -5'
5333 5' -58.4 NC_001798.1 + 152409 0.74 0.402008
Target:  5'- -gCCGGggUGCGAaugcGGCCCGACCg -3'
miRNA:   3'- cgGGUCuuGCGCUagu-CCGGGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 151623 0.76 0.296788
Target:  5'- gGCCgGGGGCGUGGccgcguccaUCAGGCCCGcCUCg -3'
miRNA:   3'- -CGGgUCUUGCGCU---------AGUCCGGGCuGGG- -5'
5333 5' -58.4 NC_001798.1 + 150970 0.71 0.566847
Target:  5'- -aCgGGAGCcccCGGUUAGuGCCCGACCCc -3'
miRNA:   3'- cgGgUCUUGc--GCUAGUC-CGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 150841 0.68 0.724653
Target:  5'- cGCCagGGGGCGcCGGUCGGGUCgCGGCg- -3'
miRNA:   3'- -CGGg-UCUUGC-GCUAGUCCGG-GCUGgg -5'
5333 5' -58.4 NC_001798.1 + 150367 0.71 0.57667
Target:  5'- -aCCGGcACgGCGGgcggcgCGGGCCCGGCCg -3'
miRNA:   3'- cgGGUCuUG-CGCUa-----GUCCGGGCUGGg -5'
5333 5' -58.4 NC_001798.1 + 150254 0.73 0.44315
Target:  5'- cGCCCGGcccucccgacccGCGCGcGUCGGucgcgccuGCCCGGCCCa -3'
miRNA:   3'- -CGGGUCu-----------UGCGC-UAGUC--------CGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 150013 0.67 0.762381
Target:  5'- gGCCCGuGGcCGCGGUC--GCCCGAgUCCg -3'
miRNA:   3'- -CGGGU-CUuGCGCUAGucCGGGCU-GGG- -5'
5333 5' -58.4 NC_001798.1 + 149663 0.68 0.734219
Target:  5'- gGCgCCGGGuCGCGGgcccCGGGCUCGgggccGCCCu -3'
miRNA:   3'- -CG-GGUCUuGCGCUa---GUCCGGGC-----UGGG- -5'
5333 5' -58.4 NC_001798.1 + 149466 0.67 0.78956
Target:  5'- gGCUCc--ACGCGG--GGGCCgCGGCCCg -3'
miRNA:   3'- -CGGGucuUGCGCUagUCCGG-GCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 148793 0.7 0.626217
Target:  5'- -gCCAGAACGaGGcCGGGcCCCGGCUCu -3'
miRNA:   3'- cgGGUCUUGCgCUaGUCC-GGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 148690 0.68 0.734219
Target:  5'- cGgCCAGAcgugcugcucuGCaCGAUCGGGCCCcccuCCCu -3'
miRNA:   3'- -CgGGUCU-----------UGcGCUAGUCCGGGcu--GGG- -5'
5333 5' -58.4 NC_001798.1 + 147907 0.79 0.203712
Target:  5'- uCCCGGGggggcagGCGCGGgUCGGGCCCGuacGCCCa -3'
miRNA:   3'- cGGGUCU-------UGCGCU-AGUCCGGGC---UGGG- -5'
5333 5' -58.4 NC_001798.1 + 147296 0.75 0.339088
Target:  5'- uCCCGGGcCGCcccgcuccCGGGCCCGACCCu -3'
miRNA:   3'- cGGGUCUuGCGcua-----GUCCGGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 147221 0.75 0.354128
Target:  5'- gGCCCccggcGGAGCGCGG--GGGCCCcggGGCCCc -3'
miRNA:   3'- -CGGG-----UCUUGCGCUagUCCGGG---CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.