miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5335 5' -56.9 NC_001798.1 + 17079 0.76 0.366048
Target:  5'- gGGUCCACGCCG--GUCGGGuccacGCCGGa -3'
miRNA:   3'- -CCAGGUGUGGUggCAGUCCua---CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 69843 0.75 0.459146
Target:  5'- uGGUCCGgGCCGCCGUC-GGccGCCc- -3'
miRNA:   3'- -CCAGGUgUGGUGGCAGuCCuaCGGcc -5'
5335 5' -56.9 NC_001798.1 + 41451 0.73 0.524505
Target:  5'- gGGUCCAUGCC-CCGcCGGGGggggcgGUCGGc -3'
miRNA:   3'- -CCAGGUGUGGuGGCaGUCCUa-----CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 58682 0.73 0.563416
Target:  5'- --aCCAcCGCCGCCGUCAGGGccgcggcgGCgCGGg -3'
miRNA:   3'- ccaGGU-GUGGUGGCAGUCCUa-------CG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 106168 0.72 0.593098
Target:  5'- -aUCCGCACgGCCG-CGGuGAuguUGCCGGa -3'
miRNA:   3'- ccAGGUGUGgUGGCaGUC-CU---ACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 150355 0.72 0.603054
Target:  5'- cGGUgCGCGuCCACCGgcacggCGGGcgGCgCGGg -3'
miRNA:   3'- -CCAgGUGU-GGUGGCa-----GUCCuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 28807 0.72 0.613031
Target:  5'- gGGUCCucCGCCGCCG-CGGGc--CCGGg -3'
miRNA:   3'- -CCAGGu-GUGGUGGCaGUCCuacGGCC- -5'
5335 5' -56.9 NC_001798.1 + 69575 0.71 0.643017
Target:  5'- cGGcCCACGCCAUCG--GGGcUGUCGGg -3'
miRNA:   3'- -CCaGGUGUGGUGGCagUCCuACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 54385 0.71 0.662978
Target:  5'- gGGgggCCGCGgCGCgGUCggcGGGAgcUGCCGGg -3'
miRNA:   3'- -CCa--GGUGUgGUGgCAG---UCCU--ACGGCC- -5'
5335 5' -56.9 NC_001798.1 + 33437 0.71 0.672927
Target:  5'- gGGgucagCCGCACCACCGgcgcgaagcCAGGG-GCCaGGg -3'
miRNA:   3'- -CCa----GGUGUGGUGGCa--------GUCCUaCGG-CC- -5'
5335 5' -56.9 NC_001798.1 + 90378 0.71 0.672927
Target:  5'- aGGuUCCGaa-CGCCGUCGGGggGCgCGGu -3'
miRNA:   3'- -CC-AGGUgugGUGGCAGUCCuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 117566 0.71 0.686801
Target:  5'- aGGUgCCGCggcgcgccggcauggACCACgGgCAGGAUGCCGu -3'
miRNA:   3'- -CCA-GGUG---------------UGGUGgCaGUCCUACGGCc -5'
5335 5' -56.9 NC_001798.1 + 37390 0.7 0.702551
Target:  5'- uGUCCGaccgaGCCACCGggCGGGuccgugggGCCGGc -3'
miRNA:   3'- cCAGGUg----UGGUGGCa-GUCCua------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 64004 0.7 0.702551
Target:  5'- cGGUCUccaGCCAgCGguUCAGGAUGCUGa -3'
miRNA:   3'- -CCAGGug-UGGUgGC--AGUCCUACGGCc -5'
5335 5' -56.9 NC_001798.1 + 27924 0.7 0.712324
Target:  5'- gGGUCCcCGCCGCCGgggUCccGgcGCCGGc -3'
miRNA:   3'- -CCAGGuGUGGUGGC---AGucCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 93270 0.7 0.722031
Target:  5'- cGGcCCGCGCCggcGCCGUCGGGgcGUaccUGGc -3'
miRNA:   3'- -CCaGGUGUGG---UGGCAGUCCuaCG---GCC- -5'
5335 5' -56.9 NC_001798.1 + 132123 0.7 0.722031
Target:  5'- aGGUCCugcaggcggccCugCGCCGcCGGGG-GCCGGc -3'
miRNA:   3'- -CCAGGu----------GugGUGGCaGUCCUaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 8071 0.69 0.741217
Target:  5'- cGGUCCugACCAcgucCCGgggaCAGGGUgGuuGGu -3'
miRNA:   3'- -CCAGGugUGGU----GGCa---GUCCUA-CggCC- -5'
5335 5' -56.9 NC_001798.1 + 39537 0.69 0.741217
Target:  5'- --gCCGCGCCucGCCGUgGGuGgcGCCGGg -3'
miRNA:   3'- ccaGGUGUGG--UGGCAgUC-CuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 86877 0.69 0.742167
Target:  5'- cGGUCgCGCuuuuCCGCCGcCGGGAaccccggcguggagcGCCGGg -3'
miRNA:   3'- -CCAG-GUGu---GGUGGCaGUCCUa--------------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.