miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5335 5' -56.9 NC_001798.1 + 1741 0.66 0.914393
Target:  5'- aGGUcCCGCGCCGCCGgcCAGc--GCaCGGc -3'
miRNA:   3'- -CCA-GGUGUGGUGGCa-GUCcuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 1996 0.66 0.914393
Target:  5'- cGGUCCAgUugC-CCGccCAGGcgGCCGu -3'
miRNA:   3'- -CCAGGU-GugGuGGCa-GUCCuaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 2587 0.68 0.830335
Target:  5'- cGUCCGCGCgGCUcuucuUCGGGggGCgCGGg -3'
miRNA:   3'- cCAGGUGUGgUGGc----AGUCCuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 3813 0.66 0.900019
Target:  5'- gGGcCCGCGCCuccuCCGccUCGGGcgccccccagagGCCGGg -3'
miRNA:   3'- -CCaGGUGUGGu---GGC--AGUCCua----------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 3884 0.68 0.805054
Target:  5'- ---aCGCGCC-CCGggggCGGGggGCCGGc -3'
miRNA:   3'- ccagGUGUGGuGGCa---GUCCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 4072 0.66 0.88301
Target:  5'- cGGcCCGCgguCGCCG-CGGGGguccggGCCGGg -3'
miRNA:   3'- -CCaGGUGug-GUGGCaGUCCUa-----CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 4207 0.66 0.88301
Target:  5'- uGGUCUGCGgCGCUGgCGGGG-GCgCGGg -3'
miRNA:   3'- -CCAGGUGUgGUGGCaGUCCUaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 5963 0.66 0.908561
Target:  5'- cGUCCcgguCGCCGCCGcacCAGGGgacaCCGGc -3'
miRNA:   3'- cCAGGu---GUGGUGGCa--GUCCUac--GGCC- -5'
5335 5' -56.9 NC_001798.1 + 8071 0.69 0.741217
Target:  5'- cGGUCCugACCAcgucCCGgggaCAGGGUgGuuGGu -3'
miRNA:   3'- -CCAGGugUGGU----GGCa---GUCCUA-CggCC- -5'
5335 5' -56.9 NC_001798.1 + 13031 0.66 0.902504
Target:  5'- aGGUgaggCACGCUGCCGggGGGAUGCgcaGGg -3'
miRNA:   3'- -CCAg---GUGUGGUGGCagUCCUACGg--CC- -5'
5335 5' -56.9 NC_001798.1 + 13666 0.66 0.882326
Target:  5'- --aCCGCgacaacuagcaggGCCGCCGUCccGAcGCCGGa -3'
miRNA:   3'- ccaGGUG-------------UGGUGGCAGucCUaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 14865 0.69 0.760039
Target:  5'- ----aACGCCGCCGUguGGAUGgUGGu -3'
miRNA:   3'- ccaggUGUGGUGGCAguCCUACgGCC- -5'
5335 5' -56.9 NC_001798.1 + 16218 0.67 0.85407
Target:  5'- ---aCGCGCCGCCuGUgGGGGggcggugggGCCGGg -3'
miRNA:   3'- ccagGUGUGGUGG-CAgUCCUa--------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 17079 0.76 0.366048
Target:  5'- gGGUCCACGCCG--GUCGGGuccacGCCGGa -3'
miRNA:   3'- -CCAGGUGUGGUggCAGUCCua---CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 17216 0.67 0.868946
Target:  5'- uGGUugUCGCACgGCCGccuuUCGGGGUcGCgCGGg -3'
miRNA:   3'- -CCA--GGUGUGgUGGC----AGUCCUA-CG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 19046 0.66 0.902504
Target:  5'- cGG-CUAUACCACC-UguGGGUgGUCGGg -3'
miRNA:   3'- -CCaGGUGUGGUGGcAguCCUA-CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 24663 0.68 0.813641
Target:  5'- --aCCugGCgGCCGUgcCGGGGcugGCCGGa -3'
miRNA:   3'- ccaGGugUGgUGGCA--GUCCUa--CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 25497 0.68 0.822071
Target:  5'- gGGcCCGCugCGCCG-CGcGGcgGCCuGGa -3'
miRNA:   3'- -CCaGGUGugGUGGCaGU-CCuaCGG-CC- -5'
5335 5' -56.9 NC_001798.1 + 27924 0.7 0.712324
Target:  5'- gGGUCCcCGCCGCCGgggUCccGgcGCCGGc -3'
miRNA:   3'- -CCAGGuGUGGUGGC---AGucCuaCGGCC- -5'
5335 5' -56.9 NC_001798.1 + 28807 0.72 0.613031
Target:  5'- gGGUCCucCGCCGCCG-CGGGc--CCGGg -3'
miRNA:   3'- -CCAGGu-GUGGUGGCaGUCCuacGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.