miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 31150 0.7 0.740052
Target:  5'- -gCGGGGGCGgCGGuGCGGggGCgACCc -3'
miRNA:   3'- caGCCCCUGCgGUU-UGUCuuCG-UGGa -5'
5351 3' -55.5 NC_001798.1 + 32323 0.66 0.923351
Target:  5'- -gCGGGGGCcgaggaaguguGCCAGGaAGAcGCGCCa -3'
miRNA:   3'- caGCCCCUG-----------CGGUUUgUCUuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 34834 0.74 0.516544
Target:  5'- -cCGGGGGCccgggccggaccGCCGGGCGGggGaCGCCUu -3'
miRNA:   3'- caGCCCCUG------------CGGUUUGUCuuC-GUGGA- -5'
5351 3' -55.5 NC_001798.1 + 34969 0.67 0.878829
Target:  5'- --aGGGGGCggccGCCGAgguGCGGggGCcCCUc -3'
miRNA:   3'- cagCCCCUG----CGGUU---UGUCuuCGuGGA- -5'
5351 3' -55.5 NC_001798.1 + 36439 0.68 0.851595
Target:  5'- gGUCGGGGuCGCgGcgggGAaggaaggaaagacccCGGAAGCGCCg -3'
miRNA:   3'- -CAGCCCCuGCGgU----UU---------------GUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 36487 0.67 0.892725
Target:  5'- --aGGGGGCGCCGgcgcGACGcGGGCgGCCg -3'
miRNA:   3'- cagCCCCUGCGGU----UUGUcUUCG-UGGa -5'
5351 3' -55.5 NC_001798.1 + 36517 0.74 0.487333
Target:  5'- -gCGGGGGCgcgcggcgGCCGGGCGGggGCGCg- -3'
miRNA:   3'- caGCCCCUG--------CGGUUUGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 36559 0.74 0.487333
Target:  5'- -gCGGGGGCgcgcggcgGCCGGGCGGggGCGCg- -3'
miRNA:   3'- caGCCCCUG--------CGGUUUGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 36601 0.74 0.487333
Target:  5'- -gCGGGGGCgcgcggcgGCCGGGCGGggGCGCg- -3'
miRNA:   3'- caGCCCCUG--------CGGUUUGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 39224 0.68 0.84028
Target:  5'- ---uGGGugGCCAGcACGGGAGC-CCa -3'
miRNA:   3'- cagcCCCugCGGUU-UGUCUUCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 39441 0.66 0.91182
Target:  5'- -gCGGGGgggucagggacaGCGCCAucAGCGGAgggGGgGCCUg -3'
miRNA:   3'- caGCCCC------------UGCGGU--UUGUCU---UCgUGGA- -5'
5351 3' -55.5 NC_001798.1 + 39705 0.66 0.91182
Target:  5'- cUCGGGGAUGCgGugccuuggucGACGGggGUuggaugcggGCCa -3'
miRNA:   3'- cAGCCCCUGCGgU----------UUGUCuuCG---------UGGa -5'
5351 3' -55.5 NC_001798.1 + 42196 0.67 0.86404
Target:  5'- -gCGGGG-CGUgAAAgUGGAAGCGCCg -3'
miRNA:   3'- caGCCCCuGCGgUUU-GUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 46695 0.68 0.839457
Target:  5'- -gCGGGGGCGUgAAuaaucgcGCAGAAGUcCCg -3'
miRNA:   3'- caGCCCCUGCGgUU-------UGUCUUCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 47019 0.69 0.769054
Target:  5'- -cCGGGGAgcCGCCGAacgcgGCAGgcGCACg- -3'
miRNA:   3'- caGCCCCU--GCGGUU-----UGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 47057 0.75 0.468298
Target:  5'- aUCGGGGACGCgCAAugcCGGGgcgacAGCGCCg -3'
miRNA:   3'- cAGCCCCUGCG-GUUu--GUCU-----UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 48368 0.67 0.892725
Target:  5'- -cCGGGGcCGCCccGCGGGGcGUGCCg -3'
miRNA:   3'- caGCCCCuGCGGuuUGUCUU-CGUGGa -5'
5351 3' -55.5 NC_001798.1 + 49980 0.66 0.905693
Target:  5'- cUCGGaGGGCGaguCCGucauGCGGGAGCACg- -3'
miRNA:   3'- cAGCC-CCUGC---GGUu---UGUCUUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 52340 0.7 0.720223
Target:  5'- -cCGGGGucgugGCgGCCGAGCAcGAGGCGCUg -3'
miRNA:   3'- caGCCCC-----UG-CGGUUUGU-CUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 54383 0.66 0.917707
Target:  5'- -cCGGGGG-GCCGcggcgcggucGGCGGGAGCuGCCg -3'
miRNA:   3'- caGCCCCUgCGGU----------UUGUCUUCG-UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.