miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 1985 0.71 0.659189
Target:  5'- cGUCGGGGGCGCgGucCAGuuGC-CCg -3'
miRNA:   3'- -CAGCCCCUGCGgUuuGUCuuCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 2470 0.67 0.885891
Target:  5'- gGUCGGGGcccucggcGgGCC-GGCGGGucAGCGCCg -3'
miRNA:   3'- -CAGCCCC--------UgCGGuUUGUCU--UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 2612 0.69 0.778486
Target:  5'- -gCGcGGGGCGCCGccCGGcGGCGCCc -3'
miRNA:   3'- caGC-CCCUGCGGUuuGUCuUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 3387 0.7 0.749828
Target:  5'- cGUCGGGGguucGCGCCc--CGGucAGCGCCg -3'
miRNA:   3'- -CAGCCCC----UGCGGuuuGUCu-UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 8950 0.68 0.81479
Target:  5'- -gCGGGGugGCCGc-CGGAccuuuauGCGCCUc -3'
miRNA:   3'- caGCCCCugCGGUuuGUCUu------CGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 10286 0.66 0.923351
Target:  5'- cGUCGGGGGgGC--GACGGggGgACg- -3'
miRNA:   3'- -CAGCCCCUgCGguUUGUCuuCgUGga -5'
5351 3' -55.5 NC_001798.1 + 10668 0.69 0.777549
Target:  5'- cGUCGGGGGgGCCAcagcgccacccacGACGGgcGCaggggACCg -3'
miRNA:   3'- -CAGCCCCUgCGGU-------------UUGUCuuCG-----UGGa -5'
5351 3' -55.5 NC_001798.1 + 11459 0.7 0.710188
Target:  5'- -gCGGGGGCGCCuguauCGGcgcuGGCAUCUa -3'
miRNA:   3'- caGCCCCUGCGGuuu--GUCu---UCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 15373 0.69 0.759498
Target:  5'- aUCGGccguGGGCGC--GGCGGAGGCGCCc -3'
miRNA:   3'- cAGCC----CCUGCGguUUGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 15508 0.72 0.58708
Target:  5'- gGUgGGGGGCGUUuucgcuGCGGAGGCGCUg -3'
miRNA:   3'- -CAgCCCCUGCGGuu----UGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 16133 0.74 0.496986
Target:  5'- gGUUGGGGGCGgaauaCCAuacCGGggGCACCg -3'
miRNA:   3'- -CAGCCCCUGC-----GGUuu-GUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 16541 0.69 0.796941
Target:  5'- cGUUGGGuGCGCCAAAUccgcguaccGGcGGCGCCa -3'
miRNA:   3'- -CAGCCCcUGCGGUUUG---------UCuUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 22145 0.68 0.84028
Target:  5'- -cCGGcGGGgGCC-AACGGGAGCGCg- -3'
miRNA:   3'- caGCC-CCUgCGGuUUGUCUUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 23732 0.68 0.848402
Target:  5'- gGUCGagcuGGACGCCGAcGCGGccuccGGCGCCUu -3'
miRNA:   3'- -CAGCc---CCUGCGGUU-UGUCu----UCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 23881 0.7 0.710188
Target:  5'- --gGGGGGCGCCcgAGGCGGAggaGGCGCg- -3'
miRNA:   3'- cagCCCCUGCGG--UUUGUCU---UCGUGga -5'
5351 3' -55.5 NC_001798.1 + 24467 0.69 0.796941
Target:  5'- -gCGGGGGugcuCGCCGccCuGggGCGCCUg -3'
miRNA:   3'- caGCCCCU----GCGGUuuGuCuuCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 26220 0.67 0.86404
Target:  5'- -gCGGGcGACGCCAuGGCGcccGgcGCGCCg -3'
miRNA:   3'- caGCCC-CUGCGGU-UUGU---CuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 27148 0.66 0.923351
Target:  5'- -aCGGGG-CGCgGGAgGGAggGGCugCUg -3'
miRNA:   3'- caGCCCCuGCGgUUUgUCU--UCGugGA- -5'
5351 3' -55.5 NC_001798.1 + 27488 0.73 0.560572
Target:  5'- -gCGGGGGCgggcgcgggaaaaaaGCCGcGCGGggGCGCCc -3'
miRNA:   3'- caGCCCCUG---------------CGGUuUGUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 29379 0.66 0.91182
Target:  5'- -cCGGGGGCGggcaCCAcuCAGGGccGCGCCg -3'
miRNA:   3'- caGCCCCUGC----GGUuuGUCUU--CGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.