miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 111643 0.78 0.295632
Target:  5'- cGUCGGGGGCGCUcgGCGGggGgGCg- -3'
miRNA:   3'- -CAGCCCCUGCGGuuUGUCuuCgUGga -5'
5351 3' -55.5 NC_001798.1 + 142949 0.77 0.355084
Target:  5'- -aCGGGGACgGCCGGGCAGAGcCGCCc -3'
miRNA:   3'- caGCCCCUG-CGGUUUGUCUUcGUGGa -5'
5351 3' -55.5 NC_001798.1 + 135222 0.76 0.413635
Target:  5'- cUCGGGGAgGCCGGGCugccGGAAGC-CCg -3'
miRNA:   3'- cAGCCCCUgCGGUUUG----UCUUCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 47057 0.75 0.468298
Target:  5'- aUCGGGGACGCgCAAugcCGGGgcgacAGCGCCg -3'
miRNA:   3'- cAGCCCCUGCG-GUUu--GUCU-----UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 36559 0.74 0.487333
Target:  5'- -gCGGGGGCgcgcggcgGCCGGGCGGggGCGCg- -3'
miRNA:   3'- caGCCCCUG--------CGGUUUGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 36601 0.74 0.487333
Target:  5'- -gCGGGGGCgcgcggcgGCCGGGCGGggGCGCg- -3'
miRNA:   3'- caGCCCCUG--------CGGUUUGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 36517 0.74 0.487333
Target:  5'- -gCGGGGGCgcgcggcgGCCGGGCGGggGCGCg- -3'
miRNA:   3'- caGCCCCUG--------CGGUUUGUCuuCGUGga -5'
5351 3' -55.5 NC_001798.1 + 16133 0.74 0.496986
Target:  5'- gGUUGGGGGCGgaauaCCAuacCGGggGCACCg -3'
miRNA:   3'- -CAGCCCCUGC-----GGUuu-GUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 34834 0.74 0.516544
Target:  5'- -cCGGGGGCccgggccggaccGCCGGGCGGggGaCGCCUu -3'
miRNA:   3'- caGCCCCUG------------CGGUUUGUCuuC-GUGGA- -5'
5351 3' -55.5 NC_001798.1 + 150833 0.73 0.536403
Target:  5'- -cCGcGGGGCGCCA---GGggGCGCCg -3'
miRNA:   3'- caGC-CCCUGCGGUuugUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 63264 0.73 0.546433
Target:  5'- cGUCGGGGGCggggGCgGAauACAGggGCugCa -3'
miRNA:   3'- -CAGCCCCUG----CGgUU--UGUCuuCGugGa -5'
5351 3' -55.5 NC_001798.1 + 27488 0.73 0.560572
Target:  5'- -gCGGGGGCgggcgcgggaaaaaaGCCGcGCGGggGCGCCc -3'
miRNA:   3'- caGCCCCUG---------------CGGUuUGUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 84105 0.73 0.576851
Target:  5'- aUCGGccGGGCGuCCAGGCcGAGGCGCCc -3'
miRNA:   3'- cAGCC--CCUGC-GGUUUGuCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 15508 0.72 0.58708
Target:  5'- gGUgGGGGGCGUUuucgcuGCGGAGGCGCUg -3'
miRNA:   3'- -CAgCCCCUGCGGuu----UGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 97554 0.72 0.628252
Target:  5'- -gCGGGGACGCCcgcgagcgaGGACGGgGAGCGCg- -3'
miRNA:   3'- caGCCCCUGCGG---------UUUGUC-UUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 147489 0.71 0.659189
Target:  5'- --gGGGGAC-CCAGGCuccgggggggGGggGCGCCUg -3'
miRNA:   3'- cagCCCCUGcGGUUUG----------UCuuCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 1985 0.71 0.659189
Target:  5'- cGUCGGGGGCGCgGucCAGuuGC-CCg -3'
miRNA:   3'- -CAGCCCCUGCGgUuuGUCuuCGuGGa -5'
5351 3' -55.5 NC_001798.1 + 60393 0.71 0.669469
Target:  5'- cGUCGGGGuCGCCcuGGgGGAguAGUACCg -3'
miRNA:   3'- -CAGCCCCuGCGGu-UUgUCU--UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 11459 0.7 0.710188
Target:  5'- -gCGGGGGCGCCuguauCGGcgcuGGCAUCUa -3'
miRNA:   3'- caGCCCCUGCGGuuu--GUCu---UCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 23881 0.7 0.710188
Target:  5'- --gGGGGGCGCCcgAGGCGGAggaGGCGCg- -3'
miRNA:   3'- cagCCCCUGCGG--UUUGUCU---UCGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.