Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5351 | 5' | -50.4 | NC_001798.1 | + | 81801 | 0.67 | 0.985093 |
Target: 5'- ----gUGGCgUCCGCCGGCacuccccgcCCCGGUCg -3' miRNA: 3'- gauaaAUUG-AGGUGGUCGc--------GGGCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 86114 | 0.66 | 0.994231 |
Target: 5'- -----gGACgcCCGCC-GCGCCgCGGUCa -3' miRNA: 3'- gauaaaUUGa-GGUGGuCGCGG-GCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 88799 | 0.69 | 0.960741 |
Target: 5'- -gAUcgAACUCCGcCCAGCGCgCG-UCa -3' miRNA: 3'- gaUAaaUUGAGGU-GGUCGCGgGCuAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 102163 | 0.66 | 0.995763 |
Target: 5'- ---------cCCACCAGCGCCgUGAUg -3' miRNA: 3'- gauaaauugaGGUGGUCGCGG-GCUAg -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 102403 | 0.69 | 0.964317 |
Target: 5'- ----aUGGCccCCACCAGCGCggCGAUCu -3' miRNA: 3'- gauaaAUUGa-GGUGGUCGCGg-GCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 104098 | 0.67 | 0.991126 |
Target: 5'- -----gAGCgCCGCCuggcgGGCGCCCGAc- -3' miRNA: 3'- gauaaaUUGaGGUGG-----UCGCGGGCUag -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 104122 | 0.66 | 0.995045 |
Target: 5'- -----cGACauaUCCACCAcGCGCCUcGUCg -3' miRNA: 3'- gauaaaUUG---AGGUGGU-CGCGGGcUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 110693 | 0.67 | 0.986832 |
Target: 5'- ---aUUGugUCCGCCGuGCGUCCGc-- -3' miRNA: 3'- gauaAAUugAGGUGGU-CGCGGGCuag -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 111535 | 0.89 | 0.166435 |
Target: 5'- -cGUggGGCUCCuCCAGCGCCCGGUCg -3' miRNA: 3'- gaUAaaUUGAGGuGGUCGCGGGCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 116781 | 0.73 | 0.861238 |
Target: 5'- gCUGU---GCUCCG-CGGCGCCCGAc- -3' miRNA: 3'- -GAUAaauUGAGGUgGUCGCGGGCUag -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 122015 | 0.77 | 0.657854 |
Target: 5'- -----gGGCUCCGCCagGGCGCCCuGGUCc -3' miRNA: 3'- gauaaaUUGAGGUGG--UCGCGGG-CUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 137935 | 0.7 | 0.939162 |
Target: 5'- -------cCUCCcCCGGcCGCCCGGUCc -3' miRNA: 3'- gauaaauuGAGGuGGUC-GCGGGCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 139326 | 0.7 | 0.943985 |
Target: 5'- ------cGCaUCGCCGGCGCCCGcgCg -3' miRNA: 3'- gauaaauUGaGGUGGUCGCGGGCuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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