miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 5' -50.4 NC_001798.1 + 1304 0.72 0.884096
Target:  5'- -cGUcgGGCUCgAgCAGCGCCCGcgCg -3'
miRNA:   3'- gaUAaaUUGAGgUgGUCGCGGGCuaG- -5'
5351 5' -50.4 NC_001798.1 + 1492 0.67 0.989839
Target:  5'- ----aUGGCgUCGCCcGCGCCCGAg- -3'
miRNA:   3'- gauaaAUUGaGGUGGuCGCGGGCUag -5'
5351 5' -50.4 NC_001798.1 + 2799 0.66 0.992281
Target:  5'- -----gGGCUCCGCggCAGCGCCgGGc- -3'
miRNA:   3'- gauaaaUUGAGGUG--GUCGCGGgCUag -5'
5351 5' -50.4 NC_001798.1 + 3030 0.66 0.992281
Target:  5'- -----gGGCUCCgGCCAGC-CCCGGc- -3'
miRNA:   3'- gauaaaUUGAGG-UGGUCGcGGGCUag -5'
5351 5' -50.4 NC_001798.1 + 3075 0.75 0.771615
Target:  5'- -------cCUCCGCCAGCGCCUccagGAUCc -3'
miRNA:   3'- gauaaauuGAGGUGGUCGCGGG----CUAG- -5'
5351 5' -50.4 NC_001798.1 + 3370 0.66 0.994144
Target:  5'- ---gUUGGCgucgCCGCCGucgucggggguucGCGCcCCGGUCa -3'
miRNA:   3'- gauaAAUUGa---GGUGGU-------------CGCG-GGCUAG- -5'
5351 5' -50.4 NC_001798.1 + 23654 0.67 0.991126
Target:  5'- cCUGg--AGCgCCGCCGG-GCCCGcgCg -3'
miRNA:   3'- -GAUaaaUUGaGGUGGUCgCGGGCuaG- -5'
5351 5' -50.4 NC_001798.1 + 24028 0.66 0.994968
Target:  5'- ----gUGGCUCCagaACCcgcgcguGGCGCCCGGg- -3'
miRNA:   3'- gauaaAUUGAGG---UGG-------UCGCGGGCUag -5'
5351 5' -50.4 NC_001798.1 + 34827 0.68 0.973665
Target:  5'- ------cGCUCCGCCgGGgGCCCGGg- -3'
miRNA:   3'- gauaaauUGAGGUGG-UCgCGGGCUag -5'
5351 5' -50.4 NC_001798.1 + 42850 0.69 0.956925
Target:  5'- -----gAACcgCCGCCAGCGCCCc--- -3'
miRNA:   3'- gauaaaUUGa-GGUGGUCGCGGGcuag -5'
5351 5' -50.4 NC_001798.1 + 43813 0.73 0.836351
Target:  5'- -----gAACUUCuCCAGCGCgCCGGUCu -3'
miRNA:   3'- gauaaaUUGAGGuGGUCGCG-GGCUAG- -5'
5351 5' -50.4 NC_001798.1 + 48299 0.66 0.993312
Target:  5'- -------cCUCCugCAGCGCgCGAa- -3'
miRNA:   3'- gauaaauuGAGGugGUCGCGgGCUag -5'
5351 5' -50.4 NC_001798.1 + 56908 0.67 0.988411
Target:  5'- -----gAACUCCGCgCGGuUGCCCGGg- -3'
miRNA:   3'- gauaaaUUGAGGUG-GUC-GCGGGCUag -5'
5351 5' -50.4 NC_001798.1 + 60498 0.66 0.992281
Target:  5'- aUAUgc-GCUgCACCAGCGUgCGAa- -3'
miRNA:   3'- gAUAaauUGAgGUGGUCGCGgGCUag -5'
5351 5' -50.4 NC_001798.1 + 62447 0.67 0.985809
Target:  5'- -----gGACgUCGCCggugggccgcgcgacGGCGCCCGGUCg -3'
miRNA:   3'- gauaaaUUGaGGUGG---------------UCGCGGGCUAG- -5'
5351 5' -50.4 NC_001798.1 + 69140 0.68 0.983184
Target:  5'- -------cCUCgGCCAGuCGCUCGGUCu -3'
miRNA:   3'- gauaaauuGAGgUGGUC-GCGGGCUAG- -5'
5351 5' -50.4 NC_001798.1 + 70112 0.68 0.973665
Target:  5'- ------cGCUCCAggucCCGGCGCCCGc-- -3'
miRNA:   3'- gauaaauUGAGGU----GGUCGCGGGCuag -5'
5351 5' -50.4 NC_001798.1 + 71245 0.66 0.994231
Target:  5'- -------cCUCCGCCGGgGCCCa--- -3'
miRNA:   3'- gauaaauuGAGGUGGUCgCGGGcuag -5'
5351 5' -50.4 NC_001798.1 + 72943 0.69 0.970773
Target:  5'- ------cGCUUCGCCAGCucGgCCGAUCa -3'
miRNA:   3'- gauaaauUGAGGUGGUCG--CgGGCUAG- -5'
5351 5' -50.4 NC_001798.1 + 74245 0.67 0.986832
Target:  5'- uCUGUUUGAC-CCGCaCGGCcuGCCCGc-- -3'
miRNA:   3'- -GAUAAAUUGaGGUG-GUCG--CGGGCuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.