Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5351 | 5' | -50.4 | NC_001798.1 | + | 111535 | 0.89 | 0.166435 |
Target: 5'- -cGUggGGCUCCuCCAGCGCCCGGUCg -3' miRNA: 3'- gaUAaaUUGAGGuGGUCGCGGGCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 122015 | 0.77 | 0.657854 |
Target: 5'- -----gGGCUCCGCCagGGCGCCCuGGUCc -3' miRNA: 3'- gauaaaUUGAGGUGG--UCGCGGG-CUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 3075 | 0.75 | 0.771615 |
Target: 5'- -------cCUCCGCCAGCGCCUccagGAUCc -3' miRNA: 3'- gauaaauuGAGGUGGUCGCGGG----CUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 43813 | 0.73 | 0.836351 |
Target: 5'- -----gAACUUCuCCAGCGCgCCGGUCu -3' miRNA: 3'- gauaaaUUGAGGuGGUCGCG-GGCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 116781 | 0.73 | 0.861238 |
Target: 5'- gCUGU---GCUCCG-CGGCGCCCGAc- -3' miRNA: 3'- -GAUAaauUGAGGUgGUCGCGGGCUag -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 1304 | 0.72 | 0.884096 |
Target: 5'- -cGUcgGGCUCgAgCAGCGCCCGcgCg -3' miRNA: 3'- gaUAaaUUGAGgUgGUCGCGGGCuaG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 137935 | 0.7 | 0.939162 |
Target: 5'- -------cCUCCcCCGGcCGCCCGGUCc -3' miRNA: 3'- gauaaauuGAGGuGGUC-GCGGGCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 139326 | 0.7 | 0.943985 |
Target: 5'- ------cGCaUCGCCGGCGCCCGcgCg -3' miRNA: 3'- gauaaauUGaGGUGGUCGCGGGCuaG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 42850 | 0.69 | 0.956925 |
Target: 5'- -----gAACcgCCGCCAGCGCCCc--- -3' miRNA: 3'- gauaaaUUGa-GGUGGUCGCGGGcuag -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 88799 | 0.69 | 0.960741 |
Target: 5'- -gAUcgAACUCCGcCCAGCGCgCG-UCa -3' miRNA: 3'- gaUAaaUUGAGGU-GGUCGCGgGCuAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 102403 | 0.69 | 0.964317 |
Target: 5'- ----aUGGCccCCACCAGCGCggCGAUCu -3' miRNA: 3'- gauaaAUUGa-GGUGGUCGCGg-GCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 72943 | 0.69 | 0.970773 |
Target: 5'- ------cGCUUCGCCAGCucGgCCGAUCa -3' miRNA: 3'- gauaaauUGAGGUGGUCG--CgGGCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 70112 | 0.68 | 0.973665 |
Target: 5'- ------cGCUCCAggucCCGGCGCCCGc-- -3' miRNA: 3'- gauaaauUGAGGU----GGUCGCGGGCuag -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 34827 | 0.68 | 0.973665 |
Target: 5'- ------cGCUCCGCCgGGgGCCCGGg- -3' miRNA: 3'- gauaaauUGAGGUGG-UCgCGGGCUag -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 69140 | 0.68 | 0.983184 |
Target: 5'- -------cCUCgGCCAGuCGCUCGGUCu -3' miRNA: 3'- gauaaauuGAGgUGGUC-GCGGGCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 81801 | 0.67 | 0.985093 |
Target: 5'- ----gUGGCgUCCGCCGGCacuccccgcCCCGGUCg -3' miRNA: 3'- gauaaAUUG-AGGUGGUCGc--------GGGCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 62447 | 0.67 | 0.985809 |
Target: 5'- -----gGACgUCGCCggugggccgcgcgacGGCGCCCGGUCg -3' miRNA: 3'- gauaaaUUGaGGUGG---------------UCGCGGGCUAG- -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 110693 | 0.67 | 0.986832 |
Target: 5'- ---aUUGugUCCGCCGuGCGUCCGc-- -3' miRNA: 3'- gauaAAUugAGGUGGU-CGCGGGCuag -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 74245 | 0.67 | 0.986832 |
Target: 5'- uCUGUUUGAC-CCGCaCGGCcuGCCCGc-- -3' miRNA: 3'- -GAUAAAUUGaGGUG-GUCG--CGGGCuag -5' |
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5351 | 5' | -50.4 | NC_001798.1 | + | 56908 | 0.67 | 0.988411 |
Target: 5'- -----gAACUCCGCgCGGuUGCCCGGg- -3' miRNA: 3'- gauaaaUUGAGGUG-GUC-GCGGGCUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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