miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5361 3' -58.2 NC_001798.1 + 147227 0.79 0.17115
Target:  5'- -cGGCGGAGCGCGGGGGCcccggggccccggGCCGCgCCGg -3'
miRNA:   3'- uaCUGUCUUGCGUCUCCG-------------CGGUG-GGC- -5'
5361 3' -58.2 NC_001798.1 + 2595 0.79 0.17158
Target:  5'- -cGGCucuucuucggGGGGCGCGG-GGCGCCGCCCGg -3'
miRNA:   3'- uaCUG----------UCUUGCGUCuCCGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 29282 0.78 0.209284
Target:  5'- uUGGCAGAacACGCAGAGccucgcGCGCCGCCgGg -3'
miRNA:   3'- uACUGUCU--UGCGUCUC------CGCGGUGGgC- -5'
5361 3' -58.2 NC_001798.1 + 16619 0.77 0.241496
Target:  5'- cGUGACGGAcgacGCGCcGGGGCaggucuuGCCGCCCGg -3'
miRNA:   3'- -UACUGUCU----UGCGuCUCCG-------CGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 34777 0.76 0.260021
Target:  5'- --aACGGAACGCGGAaacgccgccGGCGCgGCCCGg -3'
miRNA:   3'- uacUGUCUUGCGUCU---------CCGCGgUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 153041 0.76 0.272578
Target:  5'- -cGGCGGcGCGCGGuuggccGGCGCCGCCCc -3'
miRNA:   3'- uaCUGUCuUGCGUCu-----CCGCGGUGGGc -5'
5361 3' -58.2 NC_001798.1 + 153681 0.76 0.272578
Target:  5'- -gGGCgGGGACGCGGGGGcCGCCGCCgGc -3'
miRNA:   3'- uaCUG-UCUUGCGUCUCC-GCGGUGGgC- -5'
5361 3' -58.2 NC_001798.1 + 48657 0.76 0.292318
Target:  5'- -gGACAcgccucccuuccGAGCGCGGGGGacggGCCGCCCGg -3'
miRNA:   3'- uaCUGU------------CUUGCGUCUCCg---CGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 103127 0.75 0.306089
Target:  5'- gGUGAC-GAugGUuccaAGGCGCCGCCCGa -3'
miRNA:   3'- -UACUGuCUugCGuc--UCCGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 9142 0.75 0.306089
Target:  5'- --uGCGGcACGCGGGcgcGGCGCCGCCCGc -3'
miRNA:   3'- uacUGUCuUGCGUCU---CCGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 2534 0.74 0.350351
Target:  5'- -cGGCGGGGCG-GGGGGCGCgGCCCc -3'
miRNA:   3'- uaCUGUCUUGCgUCUCCGCGgUGGGc -5'
5361 3' -58.2 NC_001798.1 + 15379 0.73 0.398978
Target:  5'- -cGugGGcGCgGCGGAGGCGCCcaccggACCCGg -3'
miRNA:   3'- uaCugUCuUG-CGUCUCCGCGG------UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 149462 0.73 0.407492
Target:  5'- -cGGCGGcuccACGCGGGGGcCGCgGCCCGc -3'
miRNA:   3'- uaCUGUCu---UGCGUCUCC-GCGgUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 149964 0.73 0.416119
Target:  5'- -cGACGGAgACGCcgacGGGGGCGCggCGCCCGc -3'
miRNA:   3'- uaCUGUCU-UGCG----UCUCCGCG--GUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 146837 0.73 0.416119
Target:  5'- -cGGCAgcaacGAACGCAGGGGCccGCCGCCg- -3'
miRNA:   3'- uaCUGU-----CUUGCGUCUCCG--CGGUGGgc -5'
5361 3' -58.2 NC_001798.1 + 27222 0.73 0.433704
Target:  5'- -gGGCGGGGCGCGGGGGagGCgGCCgCGg -3'
miRNA:   3'- uaCUGUCUUGCGUCUCCg-CGgUGG-GC- -5'
5361 3' -58.2 NC_001798.1 + 153078 0.73 0.433704
Target:  5'- -gGGCGGAGCgGCGGGgcGGCGCCggGCCCu -3'
miRNA:   3'- uaCUGUCUUG-CGUCU--CCGCGG--UGGGc -5'
5361 3' -58.2 NC_001798.1 + 150834 0.72 0.442657
Target:  5'- --cGCGGGGCGCcaGGGGGCGCCGgUCGg -3'
miRNA:   3'- uacUGUCUUGCG--UCUCCGCGGUgGGC- -5'
5361 3' -58.2 NC_001798.1 + 102567 0.72 0.451713
Target:  5'- -cGGCGGGugGCGG-GGCGCggauuGCCCGg -3'
miRNA:   3'- uaCUGUCUugCGUCuCCGCGg----UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 69505 0.72 0.45995
Target:  5'- --cGCAGGACGCGccggagcGGGGCGUgGCCCGc -3'
miRNA:   3'- uacUGUCUUGCGU-------CUCCGCGgUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.