miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5361 3' -58.2 NC_001798.1 + 1400 0.7 0.557131
Target:  5'- -aGACGGGcCGCAGcGGCG-CGCCCa -3'
miRNA:   3'- uaCUGUCUuGCGUCuCCGCgGUGGGc -5'
5361 3' -58.2 NC_001798.1 + 1476 0.67 0.757226
Target:  5'- -cGGCGcgccGGGCGCcauGGCGUCGCCCGc -3'
miRNA:   3'- uaCUGU----CUUGCGucuCCGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 1630 0.68 0.708557
Target:  5'- -cGGCAGAgGCGCAGcGGCGgCGCgUCGg -3'
miRNA:   3'- uaCUGUCU-UGCGUCuCCGCgGUG-GGC- -5'
5361 3' -58.2 NC_001798.1 + 2534 0.74 0.350351
Target:  5'- -cGGCGGGGCG-GGGGGCGCgGCCCc -3'
miRNA:   3'- uaCUGUCUUGCgUCUCCGCGgUGGGc -5'
5361 3' -58.2 NC_001798.1 + 2595 0.79 0.17158
Target:  5'- -cGGCucuucuucggGGGGCGCGG-GGCGCCGCCCGg -3'
miRNA:   3'- uaCUG----------UCUUGCGUCuCCGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 2961 0.7 0.567125
Target:  5'- -aGGCGGGGCGCGucggcgugcggcGGGGCGgCCgGCCCGc -3'
miRNA:   3'- uaCUGUCUUGCGU------------CUCCGC-GG-UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 3001 0.69 0.61764
Target:  5'- -gGGCcccGGGCGCGGGGGCGCgGCgggCCGg -3'
miRNA:   3'- uaCUGu--CUUGCGUCUCCGCGgUG---GGC- -5'
5361 3' -58.2 NC_001798.1 + 4119 0.7 0.547188
Target:  5'- -gGGCGGGcucgGCcGGGGCGCCGCCCc -3'
miRNA:   3'- uaCUGUCUug--CGuCUCCGCGGUGGGc -5'
5361 3' -58.2 NC_001798.1 + 5277 0.66 0.794253
Target:  5'- ----gAGGACGCGGAGGaggagcgaucgaCGCCGCCgCGc -3'
miRNA:   3'- uacugUCUUGCGUCUCC------------GCGGUGG-GC- -5'
5361 3' -58.2 NC_001798.1 + 5712 0.68 0.718454
Target:  5'- -gGGCAaagugcGAGCGCu--GGCGCCcuGCCCGg -3'
miRNA:   3'- uaCUGU------CUUGCGucuCCGCGG--UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 8891 0.68 0.668414
Target:  5'- cUGGCGGAGgGCGGAGGCGaagguggggUugCCGu -3'
miRNA:   3'- uACUGUCUUgCGUCUCCGCg--------GugGGC- -5'
5361 3' -58.2 NC_001798.1 + 9142 0.75 0.306089
Target:  5'- --uGCGGcACGCGGGcgcGGCGCCGCCCGc -3'
miRNA:   3'- uacUGUCuUGCGUCU---CCGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 11175 0.68 0.678515
Target:  5'- -cGAUgGGGGCGguGGGGCggGCCugCCGa -3'
miRNA:   3'- uaCUG-UCUUGCguCUCCG--CGGugGGC- -5'
5361 3' -58.2 NC_001798.1 + 12887 0.67 0.728279
Target:  5'- --aGCAGggUGCugguguacGGGGGCuuggggccguGCCACCCGg -3'
miRNA:   3'- uacUGUCuuGCG--------UCUCCG----------CGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 13062 0.69 0.616624
Target:  5'- -gGGgAGAGCGUacuugcaGGAGGCGCgGgCCCGg -3'
miRNA:   3'- uaCUgUCUUGCG-------UCUCCGCGgU-GGGC- -5'
5361 3' -58.2 NC_001798.1 + 15379 0.73 0.398978
Target:  5'- -cGugGGcGCgGCGGAGGCGCCcaccggACCCGg -3'
miRNA:   3'- uaCugUCuUG-CGUCUCCGCGG------UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 15508 0.67 0.734135
Target:  5'- gGUGGgGGGcguuuucGCuGCGGAGGCGCUgcugguguucguguGCCCGg -3'
miRNA:   3'- -UACUgUCU-------UG-CGUCUCCGCGG--------------UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 15805 0.71 0.537301
Target:  5'- cGUGuccuCGGucAAgGCcauGAGGCGCCGCCCGg -3'
miRNA:   3'- -UACu---GUC--UUgCGu--CUCCGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 16191 0.67 0.737052
Target:  5'- -cGGgGGGACGCAcGGGccgcccuccgcacGCGCCGCCUGu -3'
miRNA:   3'- uaCUgUCUUGCGU-CUC-------------CGCGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 16228 0.67 0.775993
Target:  5'- nGUGGgGGGGCGguGGGGCcgggGCCcucCCCGc -3'
miRNA:   3'- -UACUgUCUUGCguCUCCG----CGGu--GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.