miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5361 5' -56.6 NC_001798.1 + 19071 0.66 0.904557
Target:  5'- gGGCGGcgGAC-CUgUgUGUGCCGUUUu -3'
miRNA:   3'- -CCGCCuaCUGcGAaAgGCGCGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 19789 0.68 0.824602
Target:  5'- cGGCGGGgaaGCGCauuUUUCgGCacCCGUCCu -3'
miRNA:   3'- -CCGCCUac-UGCG---AAAGgCGc-GGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 20348 0.68 0.824602
Target:  5'- aGGCGGuUGGCGCUg-CCGgGCgGgUUCg -3'
miRNA:   3'- -CCGCCuACUGCGAaaGGCgCGgC-AGG- -5'
5361 5' -56.6 NC_001798.1 + 22247 0.67 0.878347
Target:  5'- gGGCGGAagcgGAaGCcgcCCGCGCCGggcgCUa -3'
miRNA:   3'- -CCGCCUa---CUgCGaaaGGCGCGGCa---GG- -5'
5361 5' -56.6 NC_001798.1 + 22295 0.66 0.898334
Target:  5'- gGGCGGAgcggcggcGGCGCgaccaaCGgGCCG-CCg -3'
miRNA:   3'- -CCGCCUa-------CUGCGaaag--GCgCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 22416 0.66 0.891889
Target:  5'- cGGCGGcgucGAuCGCUccuccUCCGCGUCcUCCu -3'
miRNA:   3'- -CCGCCua--CU-GCGAa----AGGCGCGGcAGG- -5'
5361 5' -56.6 NC_001798.1 + 22928 0.66 0.916326
Target:  5'- aGGCcGAcGACGCcg-CCGCcgauGCCGUgCCg -3'
miRNA:   3'- -CCGcCUaCUGCGaaaGGCG----CGGCA-GG- -5'
5361 5' -56.6 NC_001798.1 + 23675 0.67 0.878347
Target:  5'- cGCGGcgGugGCcggCCGCGaCG-CCa -3'
miRNA:   3'- cCGCCuaCugCGaaaGGCGCgGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 23727 0.69 0.761753
Target:  5'- cGGCGGGUcgagcuggacgccGACGCggccUCCGgCGCCuUCUa -3'
miRNA:   3'- -CCGCCUA-------------CUGCGaa--AGGC-GCGGcAGG- -5'
5361 5' -56.6 NC_001798.1 + 24488 0.67 0.885225
Target:  5'- gGGCGccUGAgcgcCGCgcccgccUCCGCGCCGgCCg -3'
miRNA:   3'- -CCGCcuACU----GCGaa-----AGGCGCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 24568 0.68 0.804165
Target:  5'- cGGCGGccGGCGCgcggaggcgggCCGCGUgG-CCg -3'
miRNA:   3'- -CCGCCuaCUGCGaaa--------GGCGCGgCaGG- -5'
5361 5' -56.6 NC_001798.1 + 24642 0.66 0.906983
Target:  5'- uGGCGGAgGGCuucgacggcgaccugGCgg-CCGUGCCGgggcuggCCg -3'
miRNA:   3'- -CCGCCUaCUG---------------CGaaaGGCGCGGCa------GG- -5'
5361 5' -56.6 NC_001798.1 + 24844 0.66 0.891232
Target:  5'- cGGCGGcagcgaggccgccGUGGcCGCcgUgCGCGCCGUgagCCu -3'
miRNA:   3'- -CCGCC-------------UACU-GCGaaAgGCGCGGCA---GG- -5'
5361 5' -56.6 NC_001798.1 + 24918 0.67 0.856468
Target:  5'- cGCGGAgcccgcgccugcUGAgcucCGCcg-CCGCGCCG-CCg -3'
miRNA:   3'- cCGCCU------------ACU----GCGaaaGGCGCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 25014 0.69 0.781057
Target:  5'- cGCGGccGAcuCGCUcgCCGCGCCcgccUCCg -3'
miRNA:   3'- cCGCCuaCU--GCGAaaGGCGCGGc---AGG- -5'
5361 5' -56.6 NC_001798.1 + 25260 0.69 0.790055
Target:  5'- gGGCGGcUGGCGCcg-CCaGCcGCCGgggCCc -3'
miRNA:   3'- -CCGCCuACUGCGaaaGG-CG-CGGCa--GG- -5'
5361 5' -56.6 NC_001798.1 + 25584 0.66 0.910555
Target:  5'- gGGCGaGGaccUGGcCGCgggCCGCGCCGg-- -3'
miRNA:   3'- -CCGC-CU---ACU-GCGaaaGGCGCGGCagg -5'
5361 5' -56.6 NC_001798.1 + 25752 0.66 0.904557
Target:  5'- gGGCGcGcagGGCGUg--CUGCuGCUGUCCa -3'
miRNA:   3'- -CCGC-Cua-CUGCGaaaGGCG-CGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 26362 0.68 0.840899
Target:  5'- cGGCGGAgcuGCGCgggCCGCGgCGg-- -3'
miRNA:   3'- -CCGCCUac-UGCGaaaGGCGCgGCagg -5'
5361 5' -56.6 NC_001798.1 + 27489 0.66 0.90333
Target:  5'- cGGgGGcgGGCGCgggaaaaaagCCGCGCgGgggcgCCc -3'
miRNA:   3'- -CCgCCuaCUGCGaaa-------GGCGCGgCa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.