miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5361 5' -56.6 NC_001798.1 + 664 0.68 0.807634
Target:  5'- cGCGGGaGACGUg--CCGC-CCGcCCg -3'
miRNA:   3'- cCGCCUaCUGCGaaaGGCGcGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 1146 0.66 0.904557
Target:  5'- cGGCGGcGUGGCcaGCc--CCGCGgCgGUCCc -3'
miRNA:   3'- -CCGCC-UACUG--CGaaaGGCGC-GgCAGG- -5'
5361 5' -56.6 NC_001798.1 + 1254 0.72 0.615458
Target:  5'- gGGCGGGcc-CGCg-UCCGCGUCGUCg -3'
miRNA:   3'- -CCGCCUacuGCGaaAGGCGCGGCAGg -5'
5361 5' -56.6 NC_001798.1 + 1714 0.66 0.894493
Target:  5'- cGGcCGGAggccagcacggugcGGCGCaggucCCGCGCCG-CCg -3'
miRNA:   3'- -CC-GCCUa-------------CUGCGaaa--GGCGCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 2014 0.67 0.878347
Target:  5'- aGGCGGccGugGCgggcCCGCagaGCCGguugCCc -3'
miRNA:   3'- -CCGCCuaCugCGaaa-GGCG---CGGCa---GG- -5'
5361 5' -56.6 NC_001798.1 + 2577 0.69 0.753327
Target:  5'- gGGCGGggGGCGU---CCGCGCgGcUCUu -3'
miRNA:   3'- -CCGCCuaCUGCGaaaGGCGCGgC-AGG- -5'
5361 5' -56.6 NC_001798.1 + 2644 0.69 0.762684
Target:  5'- gGGCGGGgcucuuGCGCUUg-CGCGCC-UCCc -3'
miRNA:   3'- -CCGCCUac----UGCGAAagGCGCGGcAGG- -5'
5361 5' -56.6 NC_001798.1 + 2779 0.68 0.840899
Target:  5'- cGGCGGAgcucagcaGGCGCgggcUCCGCggcagcGCCGggcCCa -3'
miRNA:   3'- -CCGCCUa-------CUGCGaa--AGGCG------CGGCa--GG- -5'
5361 5' -56.6 NC_001798.1 + 3327 0.67 0.871258
Target:  5'- cGGCGGcgGcGgGCUUcCCGCgggcgucgucGCCGUCg -3'
miRNA:   3'- -CCGCCuaC-UgCGAAaGGCG----------CGGCAGg -5'
5361 5' -56.6 NC_001798.1 + 3365 0.72 0.615458
Target:  5'- uGGCGGuUGGCGUcg-CCGCcGUCGUCg -3'
miRNA:   3'- -CCGCCuACUGCGaaaGGCG-CGGCAGg -5'
5361 5' -56.6 NC_001798.1 + 4220 0.74 0.479283
Target:  5'- uGGCGGG-GGCGCgggCgGCGUCGUCg -3'
miRNA:   3'- -CCGCCUaCUGCGaaaGgCGCGGCAGg -5'
5361 5' -56.6 NC_001798.1 + 4363 0.66 0.891889
Target:  5'- cGGCGGggGGCGCg--CCgGCGgCGg-- -3'
miRNA:   3'- -CCGCCuaCUGCGaaaGG-CGCgGCagg -5'
5361 5' -56.6 NC_001798.1 + 4587 0.71 0.665537
Target:  5'- cGGCGGAgaaggcgagcgGGcCGCUucuucUUgCGCGCCGUCg -3'
miRNA:   3'- -CCGCCUa----------CU-GCGA-----AAgGCGCGGCAGg -5'
5361 5' -56.6 NC_001798.1 + 4701 0.69 0.77193
Target:  5'- cGGCGaGAcGACGCcgUCCGCGgcaggcUCGUCg -3'
miRNA:   3'- -CCGC-CUaCUGCGaaAGGCGC------GGCAGg -5'
5361 5' -56.6 NC_001798.1 + 5392 0.71 0.685441
Target:  5'- uGGCGGcgGccCGUUggUCGCGCCG-CCg -3'
miRNA:   3'- -CCGCCuaCu-GCGAaaGGCGCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 7885 0.66 0.916326
Target:  5'- uGGCGGAcggccgccaUGAauuuuaucgcCGCgg-CUGCGCCcugcGUCCa -3'
miRNA:   3'- -CCGCCU---------ACU----------GCGaaaGGCGCGG----CAGG- -5'
5361 5' -56.6 NC_001798.1 + 9149 0.68 0.816198
Target:  5'- cGCGGGcgcGGCGCcgcCCGCGCCGg-- -3'
miRNA:   3'- cCGCCUa--CUGCGaaaGGCGCGGCagg -5'
5361 5' -56.6 NC_001798.1 + 12717 0.7 0.714959
Target:  5'- cGGCGGG-GGCGUggugCgGCGCgaCGUCCu -3'
miRNA:   3'- -CCGCCUaCUGCGaaa-GgCGCG--GCAGG- -5'
5361 5' -56.6 NC_001798.1 + 15110 0.71 0.655541
Target:  5'- aGGCcGGUGGCGCUgucgucgUCCucgggggguuCGCCGUCCc -3'
miRNA:   3'- -CCGcCUACUGCGAa------AGGc---------GCGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 17140 0.7 0.724675
Target:  5'- cGCGGugaGGCGCgaUUCCGCGUgCGUCg -3'
miRNA:   3'- cCGCCua-CUGCGa-AAGGCGCG-GCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.