miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5361 5' -56.6 NC_001798.1 + 34857 0.81 0.211835
Target:  5'- gGGCGGggGACGCcUUCCGC-CCGgcgCCg -3'
miRNA:   3'- -CCGCCuaCUGCGaAAGGCGcGGCa--GG- -5'
5361 5' -56.6 NC_001798.1 + 122368 0.77 0.351814
Target:  5'- gGGCGGgcGACGCgcccgccccCCGCGgCUGUCCu -3'
miRNA:   3'- -CCGCCuaCUGCGaaa------GGCGC-GGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 36641 0.77 0.359532
Target:  5'- gGGCGGggGcGCGCUUUccCCGCGUCGcCCc -3'
miRNA:   3'- -CCGCCuaC-UGCGAAA--GGCGCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 43338 0.76 0.383389
Target:  5'- gGGCGGcaGUGcCGCcccCCGCGUCGUCCc -3'
miRNA:   3'- -CCGCC--UACuGCGaaaGGCGCGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 128293 0.76 0.391572
Target:  5'- uGGCGccUGACGCg--CCGCGCCcccccGUCCg -3'
miRNA:   3'- -CCGCcuACUGCGaaaGGCGCGG-----CAGG- -5'
5361 5' -56.6 NC_001798.1 + 39549 0.75 0.470066
Target:  5'- cGUGGGUGGCGCcggggCCGU-CCGUCCg -3'
miRNA:   3'- cCGCCUACUGCGaaa--GGCGcGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 78563 0.74 0.479283
Target:  5'- uGCGGGaGGCGCUggCCGCGCgCGagcgCCg -3'
miRNA:   3'- cCGCCUaCUGCGAaaGGCGCG-GCa---GG- -5'
5361 5' -56.6 NC_001798.1 + 86871 0.74 0.479283
Target:  5'- cGGCGGcgGucGCGCUUUUC-CGCCG-CCg -3'
miRNA:   3'- -CCGCCuaC--UGCGAAAGGcGCGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 4220 0.74 0.479283
Target:  5'- uGGCGGG-GGCGCgggCgGCGUCGUCg -3'
miRNA:   3'- -CCGCCUaCUGCGaaaGgCGCGGCAGg -5'
5361 5' -56.6 NC_001798.1 + 51189 0.74 0.482994
Target:  5'- cGGCGGcgcccccccgccgGGCGUccUUUCCGCGCCccagGUCCg -3'
miRNA:   3'- -CCGCCua-----------CUGCG--AAAGGCGCGG----CAGG- -5'
5361 5' -56.6 NC_001798.1 + 59692 0.74 0.482994
Target:  5'- cGGCGGGcacgcccgucuucgGGCGCUUggUgGCGUCGUCCg -3'
miRNA:   3'- -CCGCCUa-------------CUGCGAAa-GgCGCGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 68823 0.72 0.585495
Target:  5'- cGGCGG-UGACGCUagCCaGC-UCGUCCu -3'
miRNA:   3'- -CCGCCuACUGCGAaaGG-CGcGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 76904 0.72 0.605449
Target:  5'- gGGUGGAccGAC-CUggCCGaUGCCGUCCg -3'
miRNA:   3'- -CCGCCUa-CUGcGAaaGGC-GCGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 3365 0.72 0.615458
Target:  5'- uGGCGGuUGGCGUcg-CCGCcGUCGUCg -3'
miRNA:   3'- -CCGCCuACUGCGaaaGGCG-CGGCAGg -5'
5361 5' -56.6 NC_001798.1 + 153244 0.72 0.615458
Target:  5'- cGGCGGAgGAccCGCgcgCCGCcGCCG-CCg -3'
miRNA:   3'- -CCGCCUaCU--GCGaaaGGCG-CGGCaGG- -5'
5361 5' -56.6 NC_001798.1 + 1254 0.72 0.615458
Target:  5'- gGGCGGGcc-CGCg-UCCGCGUCGUCg -3'
miRNA:   3'- -CCGCCUacuGCGaaAGGCGCGGCAGg -5'
5361 5' -56.6 NC_001798.1 + 99627 0.72 0.619465
Target:  5'- aGGUGGAcgaGAUGC--UCCGCGCCGaguacggcggcuccuUCCg -3'
miRNA:   3'- -CCGCCUa--CUGCGaaAGGCGCGGC---------------AGG- -5'
5361 5' -56.6 NC_001798.1 + 106028 0.72 0.625479
Target:  5'- gGGcCGGAUGACcCg--CCGUGCCuUCCg -3'
miRNA:   3'- -CC-GCCUACUGcGaaaGGCGCGGcAGG- -5'
5361 5' -56.6 NC_001798.1 + 80794 0.72 0.632497
Target:  5'- cGGCGGGccgGACGCcgcccugcgcgacgUCGUGUCGUCCg -3'
miRNA:   3'- -CCGCCUa--CUGCGaaa-----------GGCGCGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 150374 0.72 0.635505
Target:  5'- cGGCGGgcGGCGCgggcCCG-GCCGcgUCCg -3'
miRNA:   3'- -CCGCCuaCUGCGaaa-GGCgCGGC--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.