miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5364 3' -58.4 NC_001798.1 + 36577 0.69 0.655981
Target:  5'- cGGGcgGGGGCGcGCGGCggCCgggcgggggcgcgcgGCGGCCGg -3'
miRNA:   3'- -CUCuaCCUCGC-UGCCGa-GG---------------UGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 37991 0.67 0.730843
Target:  5'- gGGGAUgcaccGGAGacguccuUGAUGGUUCCGCAGCUg -3'
miRNA:   3'- -CUCUA-----CCUC-------GCUGCCGAGGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 43674 0.67 0.722035
Target:  5'- cGGGGcUGGGGuCGugGGUggUCACGGCCc -3'
miRNA:   3'- -CUCU-ACCUC-GCugCCGa-GGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 44954 0.7 0.551034
Target:  5'- uGAGAUGauucGGGCcGCGGCUCCGCccucggaggcggAGCCGc -3'
miRNA:   3'- -CUCUAC----CUCGcUGCCGAGGUG------------UCGGU- -5'
5364 3' -58.4 NC_001798.1 + 53438 0.71 0.49267
Target:  5'- cGAGGUGGAGCugucgGGCGGCcagcugagCCGC-GCCAu -3'
miRNA:   3'- -CUCUACCUCG-----CUGCCGa-------GGUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 53966 0.67 0.741515
Target:  5'- ---cUGcGGGCGGCGGUcagcgacgUCCugGGCCAc -3'
miRNA:   3'- cucuAC-CUCGCUGCCG--------AGGugUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 56514 0.66 0.788412
Target:  5'- aGGGUGGAGCGGaucgUGGCggugCCGgGGCg- -3'
miRNA:   3'- cUCUACCUCGCU----GCCGa---GGUgUCGgu -5'
5364 3' -58.4 NC_001798.1 + 59662 0.66 0.797412
Target:  5'- aGAGggGGGGCGAcuCGGCUCgCguggggGCGGCgGg -3'
miRNA:   3'- -CUCuaCCUCGCU--GCCGAG-G------UGUCGgU- -5'
5364 3' -58.4 NC_001798.1 + 60879 0.68 0.702251
Target:  5'- aAGG-GGGGCGGCGGC-CgCACcGCCGg -3'
miRNA:   3'- cUCUaCCUCGCUGCCGaG-GUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 61278 0.69 0.631629
Target:  5'- cGGGAuagcgucuuguUGGAGCGG-GGUcgucgCCGCAGCCAc -3'
miRNA:   3'- -CUCU-----------ACCUCGCUgCCGa----GGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 62456 0.66 0.770007
Target:  5'- -cGGUGGGccgcGCGACGGCgCC-CGGUCGu -3'
miRNA:   3'- cuCUACCU----CGCUGCCGaGGuGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 74208 0.67 0.741515
Target:  5'- uGGGcAUGGGGCucuaccggGACGGCgaCACGGCCu -3'
miRNA:   3'- -CUC-UACCUCG--------CUGCCGagGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 75455 0.67 0.760619
Target:  5'- aGGccGGGGUGGcCGGCccggCCGCGGCCc -3'
miRNA:   3'- cUCuaCCUCGCU-GCCGa---GGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 77022 0.66 0.814961
Target:  5'- ----cGGAuaccGCGACGGCUCUggcCGGCCu -3'
miRNA:   3'- cucuaCCU----CGCUGCCGAGGu--GUCGGu -5'
5364 3' -58.4 NC_001798.1 + 77979 0.68 0.662056
Target:  5'- cGGcUGGAGCG-CGGCguUCCAC-GCCGc -3'
miRNA:   3'- cUCuACCUCGCuGCCG--AGGUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 79963 0.72 0.455379
Target:  5'- ----cGGAGCGGCGGCgCCGCGuccGCCGc -3'
miRNA:   3'- cucuaCCUCGCUGCCGaGGUGU---CGGU- -5'
5364 3' -58.4 NC_001798.1 + 82008 0.69 0.621478
Target:  5'- ----gGGGGCGACcGCcgCCGCGGCCGc -3'
miRNA:   3'- cucuaCCUCGCUGcCGa-GGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 88076 0.71 0.49267
Target:  5'- ---cUGGGGCGGCGGCgUCUagcucgcggaggGCGGCCAg -3'
miRNA:   3'- cucuACCUCGCUGCCG-AGG------------UGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 95378 0.68 0.662056
Target:  5'- gGAGGgcGGGGCGGCGGUcgCCAgCAGCg- -3'
miRNA:   3'- -CUCUa-CCUCGCUGCCGa-GGU-GUCGgu -5'
5364 3' -58.4 NC_001798.1 + 96447 0.74 0.338277
Target:  5'- cGAGggGGAGC---GGCUCCugGGCCAc -3'
miRNA:   3'- -CUCuaCCUCGcugCCGAGGugUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.