miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5364 3' -58.4 NC_001798.1 + 448 0.68 0.672161
Target:  5'- ----cGGGGCuGCGGUcCCGCGGCCGc -3'
miRNA:   3'- cucuaCCUCGcUGCCGaGGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 2096 0.69 0.621478
Target:  5'- cGGGggGGgcccgcccccGGCG-CGGC-CCGCGGCCAg -3'
miRNA:   3'- -CUCuaCC----------UCGCuGCCGaGGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 2268 0.69 0.651927
Target:  5'- gGGGgcGGGGCGGCGcaGCg-CGCGGCCAg -3'
miRNA:   3'- -CUCuaCCUCGCUGC--CGagGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 2506 0.66 0.797412
Target:  5'- ----cGGGGCG-CGGCggCCGCGGCg- -3'
miRNA:   3'- cucuaCCUCGCuGCCGa-GGUGUCGgu -5'
5364 3' -58.4 NC_001798.1 + 3568 0.71 0.483211
Target:  5'- cAGGUGGGGC-ACGGC-CCGC-GCCAc -3'
miRNA:   3'- cUCUACCUCGcUGCCGaGGUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 4635 0.66 0.779275
Target:  5'- cGGggGGGGCGACGGgaUCgugcgaACGGCCu -3'
miRNA:   3'- cUCuaCCUCGCUGCCgaGG------UGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 4869 0.7 0.551034
Target:  5'- cGGGGUGG-GCGGCGG-UCCGuCGGCUg -3'
miRNA:   3'- -CUCUACCuCGCUGCCgAGGU-GUCGGu -5'
5364 3' -58.4 NC_001798.1 + 6011 0.69 0.64787
Target:  5'- cGGGAcGGcAGCGGCGGCaucgcgaagggggCCACAGCgAg -3'
miRNA:   3'- -CUCUaCC-UCGCUGCCGa------------GGUGUCGgU- -5'
5364 3' -58.4 NC_001798.1 + 15700 0.66 0.797412
Target:  5'- -uGcgGGGGCGGuCGGUUCCGC-GCUu -3'
miRNA:   3'- cuCuaCCUCGCU-GCCGAGGUGuCGGu -5'
5364 3' -58.4 NC_001798.1 + 20775 0.67 0.722035
Target:  5'- ----gGGAGCGACGGCgcccgCCGCGuaggucucccGCCu -3'
miRNA:   3'- cucuaCCUCGCUGCCGa----GGUGU----------CGGu -5'
5364 3' -58.4 NC_001798.1 + 22294 0.72 0.465485
Target:  5'- cGGgcGGAGCGGCGGCggcgcgaccaacgggCCGCcGCCAc -3'
miRNA:   3'- cUCuaCCUCGCUGCCGa--------------GGUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 22515 0.69 0.611334
Target:  5'- ----cGGAGCG-CGGCUaccgaCGCGGCCGc -3'
miRNA:   3'- cucuaCCUCGCuGCCGAg----GUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 23680 0.66 0.770007
Target:  5'- -cGGUGGccggccGCGACGccacgggccGCUUCACGGCCGg -3'
miRNA:   3'- cuCUACCu-----CGCUGC---------CGAGGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 27247 0.66 0.797412
Target:  5'- -cGggGGAGgCGgccGCGGgaCCGCAGCCc -3'
miRNA:   3'- cuCuaCCUC-GC---UGCCgaGGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 27552 0.69 0.641782
Target:  5'- cGGggGGAGgGGCGGCgCCcgcgggggaGCGGCCGg -3'
miRNA:   3'- cUCuaCCUCgCUGCCGaGG---------UGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 28785 0.68 0.672161
Target:  5'- gGAGgcGGcGGCGGCGGCgcgcggguccUCCGCcGCCGc -3'
miRNA:   3'- -CUCuaCC-UCGCUGCCG----------AGGUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 31870 0.69 0.651927
Target:  5'- cGGAgGGGGCGGCGGC-CCGCccCCGg -3'
miRNA:   3'- cUCUaCCUCGCUGCCGaGGUGucGGU- -5'
5364 3' -58.4 NC_001798.1 + 32963 0.68 0.682235
Target:  5'- uGGGggGGGGgGACGGa--CACGGCCc -3'
miRNA:   3'- -CUCuaCCUCgCUGCCgagGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 35434 0.69 0.621478
Target:  5'- cGGcgGGAgGCGugGGCcgcuggcgCCGCGGCCc -3'
miRNA:   3'- cUCuaCCU-CGCugCCGa-------GGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 36514 0.69 0.655981
Target:  5'- cGGGcgGGGGCGcGCGGCggCCgggcgggggcgcgcgGCGGCCGg -3'
miRNA:   3'- -CUCuaCCUCGC-UGCCGa-GG---------------UGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.