miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5364 3' -58.4 NC_001798.1 + 149449 0.79 0.173577
Target:  5'- gGGGAgcagGGuGCGGCGGCUCCACgcgggGGCCGc -3'
miRNA:   3'- -CUCUa---CCuCGCUGCCGAGGUG-----UCGGU- -5'
5364 3' -58.4 NC_001798.1 + 149931 0.76 0.262723
Target:  5'- gGAGGaGGAgGCGGCGGCgaCCGCGGCCu -3'
miRNA:   3'- -CUCUaCCU-CGCUGCCGa-GGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 96447 0.74 0.338277
Target:  5'- cGAGggGGAGC---GGCUCCugGGCCAc -3'
miRNA:   3'- -CUCuaCCUCGcugCCGAGGugUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 105206 0.73 0.402455
Target:  5'- -cGGUGG-GCGACGGCgcugccccgUCCGCAGCg- -3'
miRNA:   3'- cuCUACCuCGCUGCCG---------AGGUGUCGgu -5'
5364 3' -58.4 NC_001798.1 + 79963 0.72 0.455379
Target:  5'- ----cGGAGCGGCGGCgCCGCGuccGCCGc -3'
miRNA:   3'- cucuaCCUCGCUGCCGaGGUGU---CGGU- -5'
5364 3' -58.4 NC_001798.1 + 22294 0.72 0.465485
Target:  5'- cGGgcGGAGCGGCGGCggcgcgaccaacgggCCGCcGCCAc -3'
miRNA:   3'- cUCuaCCUCGCUGCCGa--------------GGUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 3568 0.71 0.483211
Target:  5'- cAGGUGGGGC-ACGGC-CCGC-GCCAc -3'
miRNA:   3'- cUCUACCUCGcUGCCGaGGUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 53438 0.71 0.49267
Target:  5'- cGAGGUGGAGCugucgGGCGGCcagcugagCCGC-GCCAu -3'
miRNA:   3'- -CUCUACCUCG-----CUGCCGa-------GGUGuCGGU- -5'
5364 3' -58.4 NC_001798.1 + 88076 0.71 0.49267
Target:  5'- ---cUGGGGCGGCGGCgUCUagcucgcggaggGCGGCCAg -3'
miRNA:   3'- cucuACCUCGCUGCCG-AGG------------UGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 44954 0.7 0.551034
Target:  5'- uGAGAUGauucGGGCcGCGGCUCCGCccucggaggcggAGCCGc -3'
miRNA:   3'- -CUCUAC----CUCGcUGCCGAGGUG------------UCGGU- -5'
5364 3' -58.4 NC_001798.1 + 117937 0.7 0.551034
Target:  5'- uGGAaacgGGAuCGGCGGUaUCCACGGCCAc -3'
miRNA:   3'- cUCUa---CCUcGCUGCCG-AGGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 4869 0.7 0.551034
Target:  5'- cGGGGUGG-GCGGCGG-UCCGuCGGCUg -3'
miRNA:   3'- -CUCUACCuCGCUGCCgAGGU-GUCGGu -5'
5364 3' -58.4 NC_001798.1 + 22515 0.69 0.611334
Target:  5'- ----cGGAGCG-CGGCUaccgaCGCGGCCGc -3'
miRNA:   3'- cucuaCCUCGCuGCCGAg----GUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 82008 0.69 0.621478
Target:  5'- ----gGGGGCGACcGCcgCCGCGGCCGc -3'
miRNA:   3'- cucuaCCUCGCUGcCGa-GGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 2096 0.69 0.621478
Target:  5'- cGGGggGGgcccgcccccGGCG-CGGC-CCGCGGCCAg -3'
miRNA:   3'- -CUCuaCC----------UCGCuGCCGaGGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 35434 0.69 0.621478
Target:  5'- cGGcgGGAgGCGugGGCcgcuggcgCCGCGGCCc -3'
miRNA:   3'- cUCuaCCU-CGCugCCGa-------GGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 61278 0.69 0.631629
Target:  5'- cGGGAuagcgucuuguUGGAGCGG-GGUcgucgCCGCAGCCAc -3'
miRNA:   3'- -CUCU-----------ACCUCGCUgCCGa----GGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 153758 0.69 0.631629
Target:  5'- cAGGUGGGGCGGaagggGGCgCUGCGGCCc -3'
miRNA:   3'- cUCUACCUCGCUg----CCGaGGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 27552 0.69 0.641782
Target:  5'- cGGggGGAGgGGCGGCgCCcgcgggggaGCGGCCGg -3'
miRNA:   3'- cUCuaCCUCgCUGCCGaGG---------UGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 6011 0.69 0.64787
Target:  5'- cGGGAcGGcAGCGGCGGCaucgcgaagggggCCACAGCgAg -3'
miRNA:   3'- -CUCUaCC-UCGCUGCCGa------------GGUGUCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.