miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5364 5' -61.9 NC_001798.1 + 1882 0.8 0.096955
Target:  5'- cGGUCGCaggCGCCGGCCAGcAGCcccaggaaCUCCACg -3'
miRNA:   3'- -CCAGCG---GCGGCCGGUC-UCGa-------GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 4079 0.76 0.180426
Target:  5'- cGGUCGCCGCggggguccgGGCCGGGGCgggCUCgGCc -3'
miRNA:   3'- -CCAGCGGCGg--------CCGGUCUCGa--GAGgUG- -5'
5364 5' -61.9 NC_001798.1 + 1741 0.74 0.234322
Target:  5'- aGGUcccgCGCCGCCGGCCAGcgcacGGCgcaCUgCACg -3'
miRNA:   3'- -CCA----GCGGCGGCCGGUC-----UCGa--GAgGUG- -5'
5364 5' -61.9 NC_001798.1 + 98783 0.74 0.234322
Target:  5'- cGUCGCCGCCGGCCAc-GCcagCUgCGCg -3'
miRNA:   3'- cCAGCGGCGGCCGGUcuCGa--GAgGUG- -5'
5364 5' -61.9 NC_001798.1 + 153695 0.73 0.275258
Target:  5'- gGGcCGCCGCCGGCgCAG-GCUCaggCGCg -3'
miRNA:   3'- -CCaGCGGCGGCCG-GUCuCGAGag-GUG- -5'
5364 5' -61.9 NC_001798.1 + 3059 0.73 0.281552
Target:  5'- aGGUCGCCGUCGaagcccuccGCCAGcGC-CUCCAg -3'
miRNA:   3'- -CCAGCGGCGGC---------CGGUCuCGaGAGGUg -5'
5364 5' -61.9 NC_001798.1 + 148681 0.73 0.281552
Target:  5'- gGGUC-UgGCCGGCCAGAcgugcuGCUCUgCACg -3'
miRNA:   3'- -CCAGcGgCGGCCGGUCU------CGAGAgGUG- -5'
5364 5' -61.9 NC_001798.1 + 152203 0.73 0.294482
Target:  5'- gGGUCGCCcucucaCCGuGCCGGGGgUCUgCCGCg -3'
miRNA:   3'- -CCAGCGGc-----GGC-CGGUCUCgAGA-GGUG- -5'
5364 5' -61.9 NC_001798.1 + 43064 0.73 0.294482
Target:  5'- ---aGCCGCCGGCCGagcgcgccGGGCUCgggcgCCGCc -3'
miRNA:   3'- ccagCGGCGGCCGGU--------CUCGAGa----GGUG- -5'
5364 5' -61.9 NC_001798.1 + 120636 0.72 0.305832
Target:  5'- cGGUCGUCGCCGGUCucgcGGGCcugccccccgaugaUCUCCuGCa -3'
miRNA:   3'- -CCAGCGGCGGCCGGu---CUCG--------------AGAGG-UG- -5'
5364 5' -61.9 NC_001798.1 + 25076 0.72 0.328815
Target:  5'- --cCGCC-CCGGCCAGGGCg--CCGCc -3'
miRNA:   3'- ccaGCGGcGGCCGGUCUCGagaGGUG- -5'
5364 5' -61.9 NC_001798.1 + 77959 0.72 0.336026
Target:  5'- -cUCGCCGCCauccaccgccucGGCUGGAGCgcggcgUUCCACg -3'
miRNA:   3'- ccAGCGGCGG------------CCGGUCUCGa-----GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 10390 0.72 0.343352
Target:  5'- gGGUCGggGUCGGCacaGGGGCgggCUCCACg -3'
miRNA:   3'- -CCAGCggCGGCCGg--UCUCGa--GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 51935 0.71 0.350793
Target:  5'- gGGcCGCCGCCGuGCCGcuGCUCagCGCg -3'
miRNA:   3'- -CCaGCGGCGGC-CGGUcuCGAGagGUG- -5'
5364 5' -61.9 NC_001798.1 + 58899 0.71 0.366016
Target:  5'- cGGagGCgCGCCGGCCuccccGAGg-CUCCACa -3'
miRNA:   3'- -CCagCG-GCGGCCGGu----CUCgaGAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 42727 0.71 0.389689
Target:  5'- cGUCGCCaCCGGCCgAGGGCccgUCgcCCGCa -3'
miRNA:   3'- cCAGCGGcGGCCGG-UCUCG---AGa-GGUG- -5'
5364 5' -61.9 NC_001798.1 + 5968 0.71 0.389689
Target:  5'- cGGUCGCCGCCGcaCCAGGGgaCaCCGg -3'
miRNA:   3'- -CCAGCGGCGGCc-GGUCUCgaGaGGUg -5'
5364 5' -61.9 NC_001798.1 + 5598 0.7 0.3978
Target:  5'- aGGUCGCCccGuuGGuCCGcGGGCggCUCCGCc -3'
miRNA:   3'- -CCAGCGG--CggCC-GGU-CUCGa-GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 25008 0.7 0.414343
Target:  5'- cGUCGCCG-CGGCCGacucGCUCgCCGCg -3'
miRNA:   3'- cCAGCGGCgGCCGGUcu--CGAGaGGUG- -5'
5364 5' -61.9 NC_001798.1 + 124320 0.7 0.414343
Target:  5'- aGGUCGUCGUgGGCCGGgacggcgcggaaAGCgUCaUCCGCc -3'
miRNA:   3'- -CCAGCGGCGgCCGGUC------------UCG-AG-AGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.