miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5364 5' -61.9 NC_001798.1 + 1298 0.68 0.550204
Target:  5'- cGUCGCCGUCgGGCUcGAGCagcgC-CCGCg -3'
miRNA:   3'- cCAGCGGCGG-CCGGuCUCGa---GaGGUG- -5'
5364 5' -61.9 NC_001798.1 + 1741 0.74 0.234322
Target:  5'- aGGUcccgCGCCGCCGGCCAGcgcacGGCgcaCUgCACg -3'
miRNA:   3'- -CCA----GCGGCGGCCGGUC-----UCGa--GAgGUG- -5'
5364 5' -61.9 NC_001798.1 + 1882 0.8 0.096955
Target:  5'- cGGUCGCaggCGCCGGCCAGcAGCcccaggaaCUCCACg -3'
miRNA:   3'- -CCAGCG---GCGGCCGGUC-UCGa-------GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 2254 0.66 0.667514
Target:  5'- cGGgcgCGCCGCCGGggggCGGGGCggcgCagCGCg -3'
miRNA:   3'- -CCa--GCGGCGGCCg---GUCUCGa---GagGUG- -5'
5364 5' -61.9 NC_001798.1 + 2615 0.7 0.439932
Target:  5'- cGGggCGCCGCCcggcggcgcccuGGCCGGGGCggggCUCUugcGCu -3'
miRNA:   3'- -CCa-GCGGCGG------------CCGGUCUCGa---GAGG---UG- -5'
5364 5' -61.9 NC_001798.1 + 2874 0.67 0.569515
Target:  5'- --cUGCCGCCGGCCAcgcgcAGgUCcCCGCg -3'
miRNA:   3'- ccaGCGGCGGCCGGUc----UCgAGaGGUG- -5'
5364 5' -61.9 NC_001798.1 + 3013 0.68 0.550204
Target:  5'- cGGgggCGCgGCgGGCCGG-GCUCcggCCAg -3'
miRNA:   3'- -CCa--GCGgCGgCCGGUCuCGAGa--GGUg -5'
5364 5' -61.9 NC_001798.1 + 3059 0.73 0.281552
Target:  5'- aGGUCGCCGUCGaagcccuccGCCAGcGC-CUCCAg -3'
miRNA:   3'- -CCAGCGGCGGC---------CGGUCuCGaGAGGUg -5'
5364 5' -61.9 NC_001798.1 + 3098 0.66 0.638066
Target:  5'- --cCGCgGCaggCGGCCAG-GCaCUCCACg -3'
miRNA:   3'- ccaGCGgCG---GCCGGUCuCGaGAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 3375 0.66 0.629215
Target:  5'- cGUCGCCGCCGucGUCGgGGGUUCgcgccccggucagcgCCGCg -3'
miRNA:   3'- cCAGCGGCGGC--CGGU-CUCGAGa--------------GGUG- -5'
5364 5' -61.9 NC_001798.1 + 4028 0.7 0.414343
Target:  5'- cGUCGCgGCCGGCCAccgccgcgcGGGCccggcggcgCUCCAg -3'
miRNA:   3'- cCAGCGgCGGCCGGU---------CUCGa--------GAGGUg -5'
5364 5' -61.9 NC_001798.1 + 4079 0.76 0.180426
Target:  5'- cGGUCGCCGCggggguccgGGCCGGGGCgggCUCgGCc -3'
miRNA:   3'- -CCAGCGGCGg--------CCGGUCUCGa--GAGgUG- -5'
5364 5' -61.9 NC_001798.1 + 4907 0.66 0.667514
Target:  5'- cGGg-GCCGCCGGUCG----UCUCCGCc -3'
miRNA:   3'- -CCagCGGCGGCCGGUcucgAGAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 5301 0.68 0.550204
Target:  5'- --aCGCCGCCGcGCCccGGCUCgccgggguUCCGCc -3'
miRNA:   3'- ccaGCGGCGGC-CGGucUCGAG--------AGGUG- -5'
5364 5' -61.9 NC_001798.1 + 5598 0.7 0.3978
Target:  5'- aGGUCGCCccGuuGGuCCGcGGGCggCUCCGCc -3'
miRNA:   3'- -CCAGCGG--CggCC-GGU-CUCGa-GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 5968 0.71 0.389689
Target:  5'- cGGUCGCCGCCGcaCCAGGGgaCaCCGg -3'
miRNA:   3'- -CCAGCGGCGGCc-GGUCUCgaGaGGUg -5'
5364 5' -61.9 NC_001798.1 + 8953 0.66 0.638066
Target:  5'- gGGUgGCCGCCGGaCCuuuauGcGC-CUCgGCg -3'
miRNA:   3'- -CCAgCGGCGGCC-GGu----CuCGaGAGgUG- -5'
5364 5' -61.9 NC_001798.1 + 10390 0.72 0.343352
Target:  5'- gGGUCGggGUCGGCacaGGGGCgggCUCCACg -3'
miRNA:   3'- -CCAGCggCGGCCGg--UCUCGa--GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 15565 0.66 0.637082
Target:  5'- cGUUGCCGCC-GCCgcggcggGGAGUggcgacgaCUCCACg -3'
miRNA:   3'- cCAGCGGCGGcCGG-------UCUCGa-------GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 18304 0.66 0.628231
Target:  5'- -cUCGCCGggaaGGCCGGGGCcguguuugUCUCCGg -3'
miRNA:   3'- ccAGCGGCgg--CCGGUCUCG--------AGAGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.