miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5368 3' -48.5 NC_001798.1 + 27392 0.81 0.627187
Target:  5'- gGGCGAGCggugguGCGACuggcgucuUCGGGggGGCGGGg -3'
miRNA:   3'- -CCGCUUG------UGUUGu-------AGCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 12018 0.79 0.711706
Target:  5'- aGGUGAACGCcACggCGGGGcgGCGGGg -3'
miRNA:   3'- -CCGCUUGUGuUGuaGCCCUuuUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 126103 0.79 0.722046
Target:  5'- cGGCGAACGCGuCucugUGGGggGACGGc -3'
miRNA:   3'- -CCGCUUGUGUuGua--GCCCuuUUGCCu -5'
5368 3' -48.5 NC_001798.1 + 22338 0.78 0.762469
Target:  5'- cGCGGACGCGcggGCGUCGGG---GCGGGg -3'
miRNA:   3'- cCGCUUGUGU---UGUAGCCCuuuUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 57546 0.78 0.772288
Target:  5'- gGGCGGAUGCGuuCcgCGGGGAcGCGGAg -3'
miRNA:   3'- -CCGCUUGUGUu-GuaGCCCUUuUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 93094 0.77 0.781972
Target:  5'- gGGCGcGCGCGACGcCGGGAAcaagggcccGGCGGGc -3'
miRNA:   3'- -CCGCuUGUGUUGUaGCCCUU---------UUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 146395 0.77 0.810109
Target:  5'- cGCGGAaaaGCAGCAagaGGGggGACGGGg -3'
miRNA:   3'- cCGCUUg--UGUUGUag-CCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 146119 0.77 0.819151
Target:  5'- gGGUGGugGCGGCggCGguGGAAAGCGGAa -3'
miRNA:   3'- -CCGCUugUGUUGuaGC--CCUUUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 150096 0.76 0.82801
Target:  5'- gGGCGAGCGCGggGCggCGGaGGAAgagGCGGAg -3'
miRNA:   3'- -CCGCUUGUGU--UGuaGCC-CUUU---UGCCU- -5'
5368 3' -48.5 NC_001798.1 + 2251 0.76 0.836675
Target:  5'- cGGCGGGCGCGcCGcCGGGggG-CGGGg -3'
miRNA:   3'- -CCGCUUGUGUuGUaGCCCuuUuGCCU- -5'
5368 3' -48.5 NC_001798.1 + 60380 0.76 0.836675
Target:  5'- aGGCGcAGCugGACGUCGGGGucgcccuGGgGGAg -3'
miRNA:   3'- -CCGC-UUGugUUGUAGCCCUu------UUgCCU- -5'
5368 3' -48.5 NC_001798.1 + 41547 0.76 0.845139
Target:  5'- cGGCgGGGCGCAccgcguaaauACAUCGGuGGAGCGGAc -3'
miRNA:   3'- -CCG-CUUGUGU----------UGUAGCCcUUUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 153491 0.75 0.869246
Target:  5'- cGGCGAgaaGCACAccuGCGggCGGGGAGacACGGGg -3'
miRNA:   3'- -CCGCU---UGUGU---UGUa-GCCCUUU--UGCCU- -5'
5368 3' -48.5 NC_001798.1 + 149945 0.75 0.869246
Target:  5'- cGGCGAcCGCGGCc-UGGGAcGACGGAg -3'
miRNA:   3'- -CCGCUuGUGUUGuaGCCCUuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 66070 0.75 0.869246
Target:  5'- cGGCGAuGCGgGuguACAUCuGGAAGACGGAc -3'
miRNA:   3'- -CCGCU-UGUgU---UGUAGcCCUUUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 154406 0.75 0.884177
Target:  5'- aGGCGGGCgGCGGCggCGGGcgGGCGGc -3'
miRNA:   3'- -CCGCUUG-UGUUGuaGCCCuuUUGCCu -5'
5368 3' -48.5 NC_001798.1 + 68 0.75 0.884177
Target:  5'- aGGCGGGCgGCGGCggCGGGcgGGCGGc -3'
miRNA:   3'- -CCGCUUG-UGUUGuaGCCCuuUUGCCu -5'
5368 3' -48.5 NC_001798.1 + 66928 0.75 0.884177
Target:  5'- -aCGAACgACAACGUCGGGcugcACGGAg -3'
miRNA:   3'- ccGCUUG-UGUUGUAGCCCuuu-UGCCU- -5'
5368 3' -48.5 NC_001798.1 + 26920 0.75 0.890582
Target:  5'- gGGCGGGCgggggucgggcggGCGGgGUCGGGcgGGCGGGg -3'
miRNA:   3'- -CCGCUUG-------------UGUUgUAGCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 35808 0.75 0.898141
Target:  5'- cGGCGGggGgGgGGCGUCGGGAcucGCGGAg -3'
miRNA:   3'- -CCGCU--UgUgUUGUAGCCCUuu-UGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.