miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5368 3' -48.5 NC_001798.1 + 68 0.75 0.884177
Target:  5'- aGGCGGGCgGCGGCggCGGGcgGGCGGc -3'
miRNA:   3'- -CCGCUUG-UGUUGuaGCCCuuUUGCCu -5'
5368 3' -48.5 NC_001798.1 + 1968 0.7 0.98301
Target:  5'- cGCGcccAGCGCcgaGACGUCGGGGGcGCGGu -3'
miRNA:   3'- cCGC---UUGUG---UUGUAGCCCUUuUGCCu -5'
5368 3' -48.5 NC_001798.1 + 2251 0.76 0.836675
Target:  5'- cGGCGGGCGCGcCGcCGGGggG-CGGGg -3'
miRNA:   3'- -CCGCUUGUGUuGUaGCCCuuUuGCCU- -5'
5368 3' -48.5 NC_001798.1 + 2331 0.74 0.928629
Target:  5'- gGGCGc-CACGGCG-CGGGGAAgaGCGGGu -3'
miRNA:   3'- -CCGCuuGUGUUGUaGCCCUUU--UGCCU- -5'
5368 3' -48.5 NC_001798.1 + 2513 0.73 0.939019
Target:  5'- cGGCGGccGCggcgGCGGCGUCGGcGGGGCGGGg -3'
miRNA:   3'- -CCGCU--UG----UGUUGUAGCCcUUUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 2584 0.74 0.90475
Target:  5'- gGGCGuccGCGCGGCucuucuUCGGGggGcGCGGGg -3'
miRNA:   3'- -CCGCu--UGUGUUGu-----AGCCCuuU-UGCCU- -5'
5368 3' -48.5 NC_001798.1 + 2683 0.68 0.995674
Target:  5'- aGGCGGGCGCGGCgagcgaGUCGGccgcGgcGACGGu -3'
miRNA:   3'- -CCGCUUGUGUUG------UAGCC----CuuUUGCCu -5'
5368 3' -48.5 NC_001798.1 + 3213 0.68 0.99736
Target:  5'- aGGCGGGCGCGGCGcUCaGGcgccccAGGGCGGc -3'
miRNA:   3'- -CCGCUUGUGUUGU-AGcCC------UUUUGCCu -5'
5368 3' -48.5 NC_001798.1 + 3295 0.67 0.998701
Target:  5'- cGGCGAcgccgccGCcgACGGCAaCGGGGcgGCGGc -3'
miRNA:   3'- -CCGCU-------UG--UGUUGUaGCCCUuuUGCCu -5'
5368 3' -48.5 NC_001798.1 + 4268 0.71 0.980915
Target:  5'- aGGCGGAUGCAGacgaggaGGaGGAGGCGGAg -3'
miRNA:   3'- -CCGCUUGUGUUguag---CC-CUUUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 5251 0.7 0.989698
Target:  5'- gGGCGcGCGgGGCGggGGGAAAggaggaggacGCGGAg -3'
miRNA:   3'- -CCGCuUGUgUUGUagCCCUUU----------UGCCU- -5'
5368 3' -48.5 NC_001798.1 + 6227 0.71 0.978633
Target:  5'- cGGgGGGC-CGGC--CGGGggGACGGGc -3'
miRNA:   3'- -CCgCUUGuGUUGuaGCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 6251 0.7 0.984927
Target:  5'- cGGgGGACGggggGACGggcCGGGggGACGGGc -3'
miRNA:   3'- -CCgCUUGUg---UUGUa--GCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 6293 0.68 0.996873
Target:  5'- gGGCcGGgGgGACGggcCGGGggGACGGGc -3'
miRNA:   3'- -CCGcUUgUgUUGUa--GCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 6332 0.68 0.996873
Target:  5'- gGGCcGGgGgGACGggcCGGGggGACGGGc -3'
miRNA:   3'- -CCGcUUgUgUUGUa--GCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 6408 0.73 0.943829
Target:  5'- gGGgGGACGgGGgGaCGGGggGACGGGg -3'
miRNA:   3'- -CCgCUUGUgUUgUaGCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 6440 0.73 0.943829
Target:  5'- gGGgGGACGgGGgGaCGGGggGACGGGg -3'
miRNA:   3'- -CCgCUUGUgUUgUaGCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 6472 0.73 0.943829
Target:  5'- gGGgGGACGgGGgGaCGGGggGACGGGg -3'
miRNA:   3'- -CCgCUUGUgUUgUaGCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 6504 0.73 0.943829
Target:  5'- gGGgGGACGgGGgGaCGGGggGACGGGg -3'
miRNA:   3'- -CCgCUUGUgUUgUaGCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 6549 0.7 0.984927
Target:  5'- gGGgGGACGggggGACGggcCGGGggGACGGGg -3'
miRNA:   3'- -CCgCUUGUg---UUGUa--GCCCuuUUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.